Variant report

Variant	rs6573001
Chromosome Location	chr14:55556502-55556503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55556255..55556941-chr14:55610658..55611616,2	MCF-7	breast:
2	chr14:55555953..55557008-chr14:55599894..55600889,11	MCF-7	breast:
3	chr14:55555965..55556955-chr14:55627418..55628329,6	K562	blood:
4	chr14:55517810..55518705-chr14:55556311..55556907,2	MCF-7	breast:
5	chr14:55556335..55556955-chr14:55604620..55605483,3	MCF-7	breast:
6	chr14:55556053..55556941-chr14:55627592..55628410,6	MCF-7	breast:
7	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
8	chr14:55551518..55553277-chr14:55554973..55556876,2	MCF-7	breast:
9	chr14:55555997..55556958-chr14:55600317..55600827,2	K562	blood:
10	chr14:55550347..55552515-chr14:55555863..55558677,2	K562	blood:
11	chr14:55555833..55558389-chr14:55562200..55563979,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002054	0.82[EUR][1000 genomes]
rs10131768	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10220693	0.83[EUR][1000 genomes]
rs11848846	0.90[EUR][1000 genomes]
rs13379159	0.83[EUR][1000 genomes]
rs17832311	0.82[EUR][1000 genomes]
rs2147964	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2251366	0.81[EUR][1000 genomes]
rs2340921	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56262555	0.91[EUR][1000 genomes]
rs56725788	0.83[EUR][1000 genomes]
rs61975407	0.80[EUR][1000 genomes]
rs6572999	0.82[EUR][1000 genomes]
rs6573000	0.83[EUR][1000 genomes]
rs7141975	0.83[EUR][1000 genomes]
rs7144652	0.83[EUR][1000 genomes]
rs7161656	0.82[EUR][1000 genomes]
rs748017	0.80[EUR][1000 genomes]
rs8003624	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8004416	0.93[EUR][1000 genomes]
rs8005399	0.84[EUR][1000 genomes]
rs8012156	0.89[EUR][1000 genomes]
rs8012676	0.91[EUR][1000 genomes]
rs8019978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021929	0.82[EUR][1000 genomes]
rs8022238	0.82[EUR][1000 genomes]
rs873061	0.81[ASN][1000 genomes]
rs9323278	0.84[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:55545000-55561400	Weak transcription	HMEC	breast
6	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
7	chr14:55549200-55559800	Weak transcription	Ovary	ovary
8	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
10	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:55552200-55557000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
15	chr14:55555000-55557600	Enhancers	NHEK	skin
16	chr14:55555600-55556600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:55556000-55556600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:55556200-55556600	Flanking Active TSS	Brain Anterior Caudate	brain
19	chr14:55556200-55556600	Active TSS	Brain Hippocampus Middle	brain
20	chr14:55556200-55556600	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:55556200-55557600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr14:55556200-55560000	Enhancers	Fetal Intestine Small	intestine
23	chr14:55556200-55560200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:55556400-55556600	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr14:55556400-55557000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:55556400-55557000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr14:55556400-55557000	Enhancers	Osteobl	bone
28	chr14:55556400-55557200	Weak transcription	GM12878-XiMat	blood
29	chr14:55556400-55558600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:55556400-55558600	Weak transcription	Colonic Mucosa	Colon
31	chr14:55556400-55559400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:55556400-55561000	Weak transcription	A549	lung
33	chr14:55556400-55561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:55556400-55561600	Weak transcription	NH-A	brain
35	chr14:55556400-55561800	Weak transcription	NHLF	lung
36	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links