Variant report

Variant	rs7141975
Chromosome Location	chr14:55542216-55542217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55532764..55536002-chr14:55540824..55544423,3	MCF-7	breast:
2	chr14:55516915..55519975-chr14:55539860..55542972,3	MCF-7	breast:
3	chr14:55541558..55543377-chr14:55546059..55547718,2	K562	blood:
4	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
5	chr14:55537560..55539994-chr14:55540251..55542557,2	K562	blood:
6	chr14:55540168..55541709-chr14:55541911..55544234,2	MCF-7	breast:
7	chr14:55541160..55544026-chr14:55549457..55552985,4	K562	blood:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1002054	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10135721	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10145170	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10145268	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10220693	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11848846	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11849090	0.84[ASN][1000 genomes]
rs11849878	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11849961	0.84[EUR][1000 genomes]
rs11851178	0.88[ASN][1000 genomes]
rs1187873	0.84[ASN][1000 genomes]
rs1187874	0.82[ASN][1000 genomes]
rs1187876	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1187877	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1187878	0.86[ASN][1000 genomes]
rs1187881	0.85[EUR][1000 genomes]
rs1187883	0.83[EUR][1000 genomes]
rs1201378	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1209087	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1212641	0.84[ASN][1000 genomes]
rs13379159	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17128128	0.88[ASN][1000 genomes]
rs17128132	0.88[ASN][1000 genomes]
rs17128145	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17832311	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1952085	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2147964	0.82[EUR][1000 genomes]
rs2251366	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2340921	0.82[EUR][1000 genomes]
rs2340943	0.85[ASN][1000 genomes]
rs3742564	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55843949	0.85[ASN][1000 genomes]
rs56262555	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56725788	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60805089	0.88[ASN][1000 genomes]
rs6572999	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573000	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573001	0.83[EUR][1000 genomes]
rs7144652	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7149965	0.88[ASN][1000 genomes]
rs7151224	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7151431	0.86[ASN][1000 genomes]
rs7161656	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs748017	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8004416	0.86[EUR][1000 genomes]
rs8005399	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008134	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8012156	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8012676	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8019978	0.83[EUR][1000 genomes]
rs8021929	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8022238	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8022405	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9323278	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9806049	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
2	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
3	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55530800-55544200	Weak transcription	Colonic Mucosa	Colon
5	chr14:55531000-55544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:55532400-55544000	Weak transcription	Esophagus	oesophagus
7	chr14:55535000-55544400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:55535600-55544000	Weak transcription	A549	lung
9	chr14:55536600-55543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:55536600-55544200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:55538000-55542800	Enhancers	HSMM	muscle
12	chr14:55538000-55543000	Enhancers	HMEC	breast
13	chr14:55538200-55542800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:55538400-55543000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:55539200-55543800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:55539200-55544400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:55539400-55542800	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:55539400-55542800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:55539400-55543200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:55539400-55544000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:55539600-55543200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:55539600-55543600	Weak transcription	Placenta	Placenta
23	chr14:55539600-55543800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:55539600-55543800	Weak transcription	Fetal Intestine Large	intestine
25	chr14:55539600-55544400	Weak transcription	Left Ventricle	heart
26	chr14:55539800-55543600	Weak transcription	Fetal Intestine Small	intestine
27	chr14:55540200-55542800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr14:55540200-55544000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:55540400-55542800	Enhancers	HSMMtube	muscle
30	chr14:55540400-55542800	Enhancers	NH-A	brain
31	chr14:55540600-55543000	Enhancers	Hela-S3	cervix
32	chr14:55541200-55542400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr14:55541200-55542800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:55541200-55543000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:55541200-55543000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr14:55541400-55542600	Enhancers	Duodenum Mucosa	Duodenum
37	chr14:55541400-55542800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr14:55541400-55543000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:55541600-55542400	Enhancers	HepG2	liver
40	chr14:55541600-55543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:55541600-55543800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:55541600-55544000	Weak transcription	Fetal Muscle Leg	muscle
43	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:55541800-55542600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:55541800-55542800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr14:55541800-55542800	Enhancers	NHLF	lung
47	chr14:55541800-55542800	Enhancers	Osteobl	bone
48	chr14:55541800-55543000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:55541800-55543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr14:55541800-55543800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links