Variant report

Variant	rs11848846
Chromosome Location	chr14:55560404-55560405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55559803..55562181-chr14:55568621..55570852,2	K562	blood:
2	chr14:55559019..55561497-chr14:55562347..55564712,2	K562	blood:
3	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
4	chr14:55525084..55526733-chr14:55558948..55561565,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1002054	0.84[EUR][1000 genomes]
rs10131768	0.86[EUR][1000 genomes]
rs10220693	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13379159	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17832311	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2147964	0.90[EUR][1000 genomes]
rs2251366	0.83[EUR][1000 genomes]
rs2340921	0.90[EUR][1000 genomes]
rs56262555	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56725788	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6572999	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6573000	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6573001	0.90[EUR][1000 genomes]
rs7141975	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7144652	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7151224	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7161656	0.84[EUR][1000 genomes]
rs748017	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8003624	0.85[EUR][1000 genomes]
rs8004416	0.92[EUR][1000 genomes]
rs8005399	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8012156	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8012676	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8019978	0.90[EUR][1000 genomes]
rs8021929	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8022238	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323278	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9806049	0.80[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55545000-55561400	Weak transcription	HMEC	breast
2	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
4	chr14:55556400-55561000	Weak transcription	A549	lung
5	chr14:55556400-55561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:55556400-55561600	Weak transcription	NH-A	brain
7	chr14:55556400-55561800	Weak transcription	NHLF	lung
8	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr14:55557000-55561400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:55557000-55561400	Weak transcription	Osteobl	bone
11	chr14:55557600-55560800	Weak transcription	Hela-S3	cervix
12	chr14:55557600-55561000	Weak transcription	Placenta	Placenta
13	chr14:55557600-55561400	Weak transcription	NHEK	skin
14	chr14:55557800-55561000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
16	chr14:55559000-55560800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:55559000-55561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:55559000-55563800	Weak transcription	GM12878-XiMat	blood
19	chr14:55559200-55561600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
21	chr14:55559400-55560800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr14:55559600-55561400	Weak transcription	Fetal Kidney	kidney
23	chr14:55559600-55564000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:55559600-55564200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:55559800-55563800	Weak transcription	Adipose Nuclei	Adipose
26	chr14:55559800-55564000	Weak transcription	Fetal Intestine Large	intestine
27	chr14:55560000-55560800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:55560000-55561200	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:55560000-55561200	Weak transcription	NHDF-Ad	bronchial
30	chr14:55560000-55564000	Weak transcription	Colonic Mucosa	Colon
31	chr14:55560000-55564000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:55560000-55564000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:55560000-55564200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:55560200-55560600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:55560200-55560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:55560200-55560600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:55560200-55560600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr14:55560200-55564000	Weak transcription	Stomach Mucosa	stomach
39	chr14:55560400-55564200	Weak transcription	Rectal Mucosa Donor 31	rectum

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