Variant report

Variant	rs56725788
Chromosome Location	chr14:55540101-55540102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55537620..55541123-chr14:55657205..55659374,4	MCF-7	breast:
2	chr14:55516915..55519975-chr14:55539860..55542972,3	MCF-7	breast:
3	chr14:55536769..55540247-chr14:55595569..55598545,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126787	Chromatin interaction
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1002054	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135721	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10145170	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145268	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10220693	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11848846	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11849090	0.86[ASN][1000 genomes]
rs11849878	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11849961	0.85[EUR][1000 genomes]
rs11851178	0.90[ASN][1000 genomes]
rs1187876	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187877	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187878	0.88[ASN][1000 genomes]
rs1187881	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1187882	0.82[ASN][1000 genomes]
rs1187883	0.83[EUR][1000 genomes]
rs1201378	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1209087	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13379159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128128	0.90[ASN][1000 genomes]
rs17128132	0.90[ASN][1000 genomes]
rs17128145	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17832311	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952085	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147964	0.82[EUR][1000 genomes]
rs2251366	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2340921	0.82[EUR][1000 genomes]
rs3742564	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56262555	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60805089	0.90[ASN][1000 genomes]
rs6572999	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573000	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573001	0.83[EUR][1000 genomes]
rs7141975	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7144652	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149965	0.90[ASN][1000 genomes]
rs7150145	0.82[ASN][1000 genomes]
rs7151224	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151431	0.89[ASN][1000 genomes]
rs7161656	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs748017	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8004416	0.85[EUR][1000 genomes]
rs8005399	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008134	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8012156	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8012676	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8019978	0.83[EUR][1000 genomes]
rs8021929	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8022238	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8022405	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323278	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806049	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
2	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
3	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55530600-55541400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:55530800-55544200	Weak transcription	Colonic Mucosa	Colon
6	chr14:55531000-55544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:55531600-55541200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:55532400-55544000	Weak transcription	Esophagus	oesophagus
9	chr14:55532600-55541600	Weak transcription	HepG2	liver
10	chr14:55533400-55541400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:55534800-55541200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:55535000-55544400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:55535600-55544000	Weak transcription	A549	lung
14	chr14:55536600-55543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:55536600-55544200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:55536800-55540800	Weak transcription	K562	blood
17	chr14:55538000-55541000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:55538000-55542800	Enhancers	HSMM	muscle
19	chr14:55538000-55543000	Enhancers	HMEC	breast
20	chr14:55538200-55542800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:55538400-55543000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:55538600-55540200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr14:55538600-55540200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr14:55538800-55540600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:55539000-55541400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr14:55539000-55541400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:55539200-55540600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:55539200-55540600	Weak transcription	Hela-S3	cervix
29	chr14:55539200-55541000	Enhancers	Primary B cells from cord blood	blood
30	chr14:55539200-55541200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:55539200-55541200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr14:55539200-55541400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:55539200-55541600	Enhancers	Rectal Smooth Muscle	rectum
34	chr14:55539200-55543800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr14:55539200-55544400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:55539400-55540200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr14:55539400-55540400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:55539400-55540400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:55539400-55540600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:55539400-55541000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:55539400-55541000	Weak transcription	Fetal Stomach	stomach
42	chr14:55539400-55541200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:55539400-55541200	Weak transcription	Fetal Lung	lung
44	chr14:55539400-55541200	Weak transcription	Stomach Mucosa	stomach
45	chr14:55539400-55541400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:55539400-55541400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr14:55539400-55541400	Enhancers	Osteobl	bone
48	chr14:55539400-55541800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:55539400-55542800	Enhancers	Primary B cells from peripheral blood	blood
50	chr14:55539400-55542800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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