Variant report

Variant	rs8004416
Chromosome Location	chr14:55549553-55549554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55520461..55523656-chr14:55547277..55549702,3	K562	blood:
2	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
3	chr14:55519592..55523074-chr14:55547294..55549718,3	K562	blood:
4	chr14:55541160..55544026-chr14:55549457..55552985,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1002054	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs10131768	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145170	0.81[EUR][1000 genomes]
rs10145268	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10220693	0.86[EUR][1000 genomes]
rs10467798	1.00[YRI][hapmap]
rs11848846	0.92[EUR][1000 genomes]
rs1187876	0.80[CEU][hapmap]
rs1187877	0.85[CEU][hapmap]
rs1201378	0.85[CEU][hapmap]
rs1209087	0.85[CEU][hapmap]
rs13379159	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs17832311	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2075601	1.00[YRI][hapmap]
rs2075602	1.00[YRI][hapmap]
rs2147964	0.90[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2251366	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2340921	0.90[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2341621	1.00[YRI][hapmap]
rs2341622	1.00[YRI][hapmap]
rs3818451	1.00[YRI][hapmap]
rs4652	1.00[YRI][hapmap]
rs56262555	0.93[EUR][1000 genomes]
rs56725788	0.85[EUR][1000 genomes]
rs6572999	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6573000	0.87[EUR][1000 genomes]
rs6573001	0.93[EUR][1000 genomes]
rs6573009	1.00[YRI][hapmap]
rs6573013	1.00[YRI][hapmap]
rs7141975	0.86[EUR][1000 genomes]
rs7144652	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7151224	0.83[EUR][1000 genomes]
rs7159808	1.00[YRI][hapmap]
rs7160523	1.00[YRI][hapmap]
rs7161656	0.86[EUR][1000 genomes]
rs748017	0.84[EUR][1000 genomes]
rs8003624	0.87[EUR][1000 genomes]
rs8004787	1.00[YRI][hapmap]
rs8005399	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs8008134	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs8009670	1.00[YRI][hapmap]
rs8012156	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs8012676	0.93[EUR][1000 genomes]
rs8019978	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs8021929	0.85[EUR][1000 genomes]
rs8022238	0.85[EUR][1000 genomes]
rs8022405	0.80[EUR][1000 genomes]
rs9323278	0.86[EUR][1000 genomes]
rs9806049	0.88[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:55545000-55561400	Weak transcription	HMEC	breast
8	chr14:55546200-55551200	Weak transcription	Fetal Intestine Small	intestine
9	chr14:55546800-55551400	Weak transcription	GM12878-XiMat	blood
10	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
11	chr14:55548000-55551000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:55548400-55551000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr14:55549200-55559800	Weak transcription	Ovary	ovary
14	chr14:55549400-55551200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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