Variant report

Variant	rs11849961
Chromosome Location	chr14:55501078-55501079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55500393..55503713-chr14:55510224..55513637,3	K562	blood:
2	chr14:55500498..55503547-chr14:55504046..55507055,3	K562	blood:
3	chr14:55500498..55502436-chr14:55505187..55507055,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1002054	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs10135721	0.87[EUR][1000 genomes]
rs10145170	0.89[EUR][1000 genomes]
rs10145268	0.92[CEU][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs10220693	0.83[EUR][1000 genomes]
rs1187876	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1187877	0.93[CEU][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs1187881	0.85[EUR][1000 genomes]
rs1187883	0.82[EUR][1000 genomes]
rs1201378	0.93[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs1209087	0.93[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs13379159	0.89[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs17832311	0.89[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs2147964	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2251366	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs2340921	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs56725788	0.85[EUR][1000 genomes]
rs6572999	0.89[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs6573000	0.84[EUR][1000 genomes]
rs7141975	0.84[EUR][1000 genomes]
rs7144652	0.88[CEU][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs7151224	0.86[EUR][1000 genomes]
rs7161656	0.86[EUR][1000 genomes]
rs748017	0.82[EUR][1000 genomes]
rs8005399	0.81[CEU][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs8008134	0.93[CEU][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs8019978	0.87[ASW][hapmap];0.89[CEU][hapmap];0.86[CHB][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap]
rs8022238	0.82[EUR][1000 genomes]
rs8022405	0.88[EUR][1000 genomes]
rs9323278	0.84[EUR][1000 genomes]
rs9806049	0.92[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11849961	WDHD1	cis	parietal	SCAN
rs11849961	FBXO34	cis	cerebellum	SCAN
rs11849961	ATG14	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55494400-55509800	Weak transcription	Spleen	Spleen
2	chr14:55494400-55517600	Weak transcription	Lung	lung
3	chr14:55494600-55509800	Weak transcription	Gastric	stomach
4	chr14:55494800-55501800	Weak transcription	Placenta	Placenta
5	chr14:55495000-55501800	Weak transcription	Left Ventricle	heart
6	chr14:55495000-55509800	Weak transcription	Ovary	ovary
7	chr14:55495000-55517600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:55495000-55517600	Weak transcription	Esophagus	oesophagus
9	chr14:55495200-55501600	Weak transcription	Fetal Intestine Large	intestine
10	chr14:55495200-55502000	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:55495200-55504800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:55495200-55504800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:55495200-55507600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:55495200-55509800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:55495200-55510400	Weak transcription	Psoas Muscle	Psoas
16	chr14:55495200-55517600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:55495200-55517600	Weak transcription	Colonic Mucosa	Colon
18	chr14:55495200-55517800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr14:55495200-55517800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:55495400-55501600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:55495400-55509800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:55495400-55517600	Weak transcription	Right Ventricle	heart
23	chr14:55495600-55503600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:55495600-55504200	Weak transcription	Small Intestine	intestine
25	chr14:55495600-55505400	Weak transcription	Fetal Stomach	stomach
26	chr14:55495600-55509800	Weak transcription	Aorta	Aorta
27	chr14:55495600-55509800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:55495600-55509800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:55495600-55510000	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:55495600-55510000	Weak transcription	Fetal Brain Female	brain
31	chr14:55495600-55517600	Weak transcription	Brain Substantia Nigra	brain
32	chr14:55495600-55517600	Weak transcription	Fetal Kidney	kidney
33	chr14:55495600-55517600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:55495800-55501800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:55495800-55505400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:55496000-55502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:55496000-55509800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:55496000-55510400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:55496200-55501800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr14:55496200-55502800	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:55496200-55505000	Weak transcription	Stomach Mucosa	stomach
42	chr14:55496200-55509800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:55496200-55509800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:55496200-55509800	Weak transcription	NHLF	lung
45	chr14:55496200-55510000	Weak transcription	Brain Anterior Caudate	brain
46	chr14:55496200-55510400	Weak transcription	Brain Germinal Matrix	brain
47	chr14:55496200-55510400	Weak transcription	Fetal Lung	lung
48	chr14:55496200-55517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr14:55496200-55517600	Weak transcription	Fetal Heart	heart
50	chr14:55496400-55501800	Weak transcription	Primary T cells from cord blood	blood

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