Variant report

Variant	rs873061
Chromosome Location	chr14:55546326-55546327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10131768	0.81[ASN][1000 genomes]
rs10873087	0.85[EUR][1000 genomes]
rs11158030	0.87[EUR][1000 genomes]
rs11158031	0.87[EUR][1000 genomes]
rs11622128	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs11626816	0.92[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs11627884	0.92[CEU][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs11845087	0.88[EUR][1000 genomes]
rs11845948	0.87[EUR][1000 genomes]
rs2340921	0.81[ASN][1000 genomes]
rs6573001	0.81[ASN][1000 genomes]
rs67870023	0.89[EUR][1000 genomes]
rs7144226	0.86[EUR][1000 genomes]
rs7157678	0.85[EUR][1000 genomes]
rs8015165	0.80[EUR][1000 genomes]
rs8019978	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs9671895	0.92[CEU][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs873061	ATG14	cis	parietal	SCAN
rs873061	FBXO34	cis	cerebellum	SCAN
rs873061	FBXO34	cis	parietal	SCAN
rs873061	FRMD6	cis	parietal	SCAN
rs873061	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55543600-55546400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:55545000-55561400	Weak transcription	HMEC	breast
9	chr14:55545800-55546800	Enhancers	GM12878-XiMat	blood
10	chr14:55546000-55546600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr14:55546000-55547800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:55546200-55547000	Enhancers	Hela-S3	cervix
13	chr14:55546200-55551200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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