Variant report

Variant	rs11845948
Chromosome Location	chr14:55567991-55567992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55567781..55570469-chr14:56684263..56686349,2	K562	blood:
2	chr14:55564337..55568132-chr14:55580287..55582932,3	MCF-7	breast:
3	chr14:55558620..55560382-chr14:55567548..55569808,2	MCF-7	breast:
4	chr14:55562349..55566055-chr14:55567766..55570193,3	K562	blood:
5	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
6	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10873087	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158030	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158031	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11622128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625204	0.91[ASN][1000 genomes]
rs11626816	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11627884	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11845087	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147963	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61178993	0.92[ASN][1000 genomes]
rs66962212	0.92[ASN][1000 genomes]
rs66999765	0.91[ASN][1000 genomes]
rs67652508	0.92[ASN][1000 genomes]
rs67870023	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144226	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157678	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7494066	0.92[ASN][1000 genomes]
rs8015165	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8016295	0.92[ASN][1000 genomes]
rs873061	0.87[EUR][1000 genomes]
rs9671895	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11845948	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
2	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
3	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55561800-55568400	Weak transcription	HMEC	breast
6	chr14:55561800-55568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:55562000-55568800	Weak transcription	HSMM	muscle
8	chr14:55564000-55569000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:55564000-55569200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:55564000-55570200	Enhancers	Stomach Mucosa	stomach
11	chr14:55564200-55568400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:55564200-55568400	Weak transcription	Gastric	stomach
13	chr14:55564200-55568800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:55564200-55569000	Enhancers	Fetal Intestine Small	intestine
15	chr14:55564400-55569800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:55564800-55568600	Weak transcription	Brain Angular Gyrus	brain
17	chr14:55565000-55568600	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:55565000-55568600	Weak transcription	A549	lung
19	chr14:55565000-55568800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:55565200-55568600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr14:55565200-55568600	Weak transcription	Brain Substantia Nigra	brain
22	chr14:55565200-55569000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr14:55565200-55569000	Weak transcription	Brain Anterior Caudate	brain
24	chr14:55565200-55570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:55565400-55568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:55565400-55568400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:55565400-55568600	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:55565400-55568600	Weak transcription	NH-A	brain
29	chr14:55565400-55568800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr14:55565400-55568800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:55565400-55568800	Weak transcription	K562	blood
32	chr14:55565400-55569000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:55565600-55568600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr14:55565600-55568600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr14:55565600-55568600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:55565600-55568600	Weak transcription	Spleen	Spleen
37	chr14:55565800-55568400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr14:55565800-55568600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr14:55565800-55568600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:55565800-55568600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr14:55565800-55568600	Weak transcription	Psoas Muscle	Psoas
42	chr14:55565800-55568800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:55566000-55568800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:55566200-55569200	Enhancers	NHDF-Ad	bronchial
45	chr14:55566400-55568800	Enhancers	Hela-S3	cervix
46	chr14:55566400-55568800	Enhancers	NHEK	skin
47	chr14:55566400-55569800	Enhancers	Adipose Nuclei	Adipose
48	chr14:55566400-55570600	Enhancers	Fetal Lung	lung
49	chr14:55566400-55570800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:55566400-55570800	Enhancers	Cortex derived primary cultured neurospheres	brain

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