Variant report

Variant	rs11625204
Chromosome Location	chr14:55554917-55554918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
2	chr14:55544550..55546055-chr14:55553686..55556221,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10873087	0.81[ASN][1000 genomes]
rs11158030	0.93[ASN][1000 genomes]
rs11158031	0.93[ASN][1000 genomes]
rs11622128	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11626816	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11627884	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11845087	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11845948	0.91[ASN][1000 genomes]
rs11851178	0.86[JPT][hapmap]
rs1187873	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1187874	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1187876	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1187878	0.86[JPT][hapmap]
rs1212641	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17128132	0.86[JPT][hapmap]
rs17128145	0.92[JPT][hapmap]
rs1952085	0.86[JPT][hapmap]
rs2147963	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340943	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55843949	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61178993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66962212	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66999765	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67652508	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67870023	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7144226	0.92[ASN][1000 genomes]
rs7149965	0.86[JPT][hapmap]
rs7150145	0.86[JPT][hapmap]
rs7157678	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7494066	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8015165	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8016295	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9671895	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11625204	C14orf32	Cis_1M	lymphoblastoid	RTeQTL
rs11625204	C14orf32	cis	normal skin	skin_eQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:55545000-55561400	Weak transcription	HMEC	breast
7	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
8	chr14:55549200-55559800	Weak transcription	Ovary	ovary
9	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
11	chr14:55551600-55556200	Weak transcription	GM12878-XiMat	blood
12	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:55552200-55557000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
17	chr14:55554000-55556200	Weak transcription	Fetal Intestine Small	intestine

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