Variant report

Variant	rs8016295
Chromosome Location	chr14:55556914-55556915
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55556255..55556941-chr14:55610658..55611616,2	MCF-7	breast:
2	chr14:55368968..55370719-chr14:55556794..55559015,2	MCF-7	breast:
3	chr14:55555953..55557008-chr14:55599894..55600889,11	MCF-7	breast:
4	chr14:55555965..55556955-chr14:55627418..55628329,6	K562	blood:
5	chr14:55556335..55556955-chr14:55604620..55605483,3	MCF-7	breast:
6	chr14:55556053..55556941-chr14:55627592..55628410,6	MCF-7	breast:
7	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
8	chr14:55555997..55556958-chr14:55600317..55600827,2	K562	blood:
9	chr14:55550347..55552515-chr14:55555863..55558677,2	K562	blood:
10	chr14:55555833..55558389-chr14:55562200..55563979,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131979	Chromatin interaction
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10873087	0.82[ASN][1000 genomes]
rs11158030	0.94[ASN][1000 genomes]
rs11158031	0.94[ASN][1000 genomes]
rs11622128	0.94[ASN][1000 genomes]
rs11625204	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626816	0.94[ASN][1000 genomes]
rs11627884	0.94[ASN][1000 genomes]
rs11845087	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11845948	0.92[ASN][1000 genomes]
rs1187873	0.85[ASN][1000 genomes]
rs1187874	0.83[ASN][1000 genomes]
rs1212641	0.85[ASN][1000 genomes]
rs2147963	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2340943	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55843949	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61178993	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66962212	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66999765	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67652508	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67870023	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7144226	0.93[ASN][1000 genomes]
rs7157678	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7494066	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015165	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9671895	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8016295	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:55545000-55561400	Weak transcription	HMEC	breast
4	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
5	chr14:55549200-55559800	Weak transcription	Ovary	ovary
6	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
8	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:55552200-55557000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
13	chr14:55555000-55557600	Enhancers	NHEK	skin
14	chr14:55556200-55557600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr14:55556200-55560000	Enhancers	Fetal Intestine Small	intestine
16	chr14:55556200-55560200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:55556400-55557000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:55556400-55557000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:55556400-55557000	Enhancers	Osteobl	bone
20	chr14:55556400-55557200	Weak transcription	GM12878-XiMat	blood
21	chr14:55556400-55558600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:55556400-55558600	Weak transcription	Colonic Mucosa	Colon
23	chr14:55556400-55559400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:55556400-55561000	Weak transcription	A549	lung
25	chr14:55556400-55561400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:55556400-55561600	Weak transcription	NH-A	brain
27	chr14:55556400-55561800	Weak transcription	NHLF	lung
28	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr14:55556600-55557000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:55556600-55557200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr14:55556600-55557600	Enhancers	Placenta	Placenta
32	chr14:55556600-55557800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr14:55556600-55559800	Enhancers	Fetal Intestine Large	intestine
34	chr14:55556800-55557000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr14:55556800-55559000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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