Variant report

Variant	rs11627884
Chromosome Location	chr14:55565165-55565166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55564337..55568132-chr14:55580287..55582932,3	MCF-7	breast:
2	chr14:55562349..55566055-chr14:55567766..55570193,3	K562	blood:
3	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10873087	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158030	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625204	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs11626816	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845087	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11845948	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851178	0.86[JPT][hapmap]
rs1187873	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1187874	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1187876	0.85[JPT][hapmap]
rs1187878	0.86[JPT][hapmap]
rs1212641	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17128132	0.86[JPT][hapmap]
rs17128145	0.92[JPT][hapmap]
rs17253633	0.84[CHB][hapmap]
rs1952085	0.86[JPT][hapmap]
rs2147963	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340943	0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs55843949	0.81[ASN][1000 genomes]
rs61178993	0.94[ASN][1000 genomes]
rs66962212	0.94[ASN][1000 genomes]
rs66999765	0.93[ASN][1000 genomes]
rs67652508	0.94[ASN][1000 genomes]
rs67870023	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7144226	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7149965	0.86[JPT][hapmap]
rs7150145	0.86[JPT][hapmap]
rs7157678	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7494066	0.94[ASN][1000 genomes]
rs8015165	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016295	0.94[ASN][1000 genomes]
rs873061	0.87[EUR][1000 genomes]
rs9671895	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11627884	FBXO34	cis	cerebellum	SCAN
rs11627884	C14orf32	Cis_1M	lymphoblastoid	RTeQTL
rs11627884	FBXO34	cis	parietal	SCAN

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
2	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
3	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55561800-55568400	Weak transcription	HMEC	breast
6	chr14:55561800-55568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:55562000-55566400	Weak transcription	NHLF	lung
8	chr14:55562000-55566600	Weak transcription	Osteobl	bone
9	chr14:55562000-55568800	Weak transcription	HSMM	muscle
10	chr14:55563600-55565200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:55563600-55565600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:55563800-55565200	Enhancers	Adipose Nuclei	Adipose
13	chr14:55563800-55565800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:55563800-55567200	Enhancers	Placenta	Placenta
15	chr14:55564000-55565200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr14:55564000-55565600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr14:55564000-55565600	Enhancers	Fetal Intestine Large	intestine
18	chr14:55564000-55565600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr14:55564000-55565600	Enhancers	Small Intestine	intestine
20	chr14:55564000-55565800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr14:55564000-55566000	Enhancers	Duodenum Mucosa	Duodenum
22	chr14:55564000-55566800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr14:55564000-55569000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:55564000-55569200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr14:55564000-55570200	Enhancers	Stomach Mucosa	stomach
26	chr14:55564200-55565200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr14:55564200-55565200	Enhancers	NHEK	skin
28	chr14:55564200-55565400	Enhancers	Hela-S3	cervix
29	chr14:55564200-55565600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr14:55564200-55565600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:55564200-55565800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:55564200-55565800	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr14:55564200-55566000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:55564200-55566000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:55564200-55567000	Weak transcription	Lung	lung
36	chr14:55564200-55568400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:55564200-55568400	Weak transcription	Gastric	stomach
38	chr14:55564200-55568800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:55564200-55569000	Enhancers	Fetal Intestine Small	intestine
40	chr14:55564400-55565400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:55564400-55565800	Enhancers	Primary B cells from peripheral blood	blood
42	chr14:55564400-55566200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr14:55564400-55566800	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr14:55564400-55569800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr14:55564600-55565200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:55564600-55565200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr14:55564600-55565200	Enhancers	Brain Anterior Caudate	brain
48	chr14:55564600-55565200	Enhancers	Brain Substantia Nigra	brain
49	chr14:55564600-55565200	Enhancers	Colonic Mucosa	Colon
50	chr14:55564600-55565200	Enhancers	HepG2	liver

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