Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
2	chr14:55541160..55544026-chr14:55549457..55552985,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10873087	0.82[ASN][1000 genomes]
rs11158030	0.94[ASN][1000 genomes]
rs11158031	0.94[ASN][1000 genomes]
rs11622128	0.94[ASN][1000 genomes]
rs11625204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626816	0.94[ASN][1000 genomes]
rs11627884	0.94[ASN][1000 genomes]
rs11845087	0.96[ASN][1000 genomes]
rs11845948	0.92[ASN][1000 genomes]
rs1187873	0.85[ASN][1000 genomes]
rs1187874	0.83[ASN][1000 genomes]
rs1212641	0.85[ASN][1000 genomes]
rs2147963	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2340943	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55843949	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66962212	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66999765	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67652508	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67870023	0.96[ASN][1000 genomes]
rs7144226	0.93[ASN][1000 genomes]
rs7157678	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7494066	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015165	0.96[ASN][1000 genomes]
rs8016295	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671895	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61178993	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:55545000-55561400	Weak transcription	HMEC	breast
8	chr14:55546200-55551200	Weak transcription	Fetal Intestine Small	intestine
9	chr14:55546800-55551400	Weak transcription	GM12878-XiMat	blood
10	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
11	chr14:55548000-55551000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:55548400-55551000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr14:55549200-55559800	Weak transcription	Ovary	ovary
14	chr14:55549400-55551200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: