Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
2	chr14:55551518..55553277-chr14:55554973..55556876,2	MCF-7	breast:
3	chr14:55544550..55546055-chr14:55553686..55556221,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10873087	0.82[ASN][1000 genomes]
rs11158030	0.94[ASN][1000 genomes]
rs11158031	0.94[ASN][1000 genomes]
rs11622128	0.94[ASN][1000 genomes]
rs11625204	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626816	0.94[ASN][1000 genomes]
rs11627884	0.94[ASN][1000 genomes]
rs11845087	0.96[ASN][1000 genomes]
rs11845948	0.92[ASN][1000 genomes]
rs1187873	0.85[ASN][1000 genomes]
rs1187874	0.83[ASN][1000 genomes]
rs1212641	0.85[ASN][1000 genomes]
rs2147963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2340943	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55843949	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61178993	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66999765	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67652508	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67870023	0.96[ASN][1000 genomes]
rs7144226	0.93[ASN][1000 genomes]
rs7157678	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7494066	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015165	0.96[ASN][1000 genomes]
rs8016295	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671895	0.96[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:55545000-55561400	Weak transcription	HMEC	breast
7	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
8	chr14:55549200-55559800	Weak transcription	Ovary	ovary
9	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
11	chr14:55551600-55556200	Weak transcription	GM12878-XiMat	blood
12	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:55552200-55557000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
17	chr14:55554000-55556200	Weak transcription	Fetal Intestine Small	intestine
18	chr14:55555000-55556000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:55555000-55557600	Enhancers	NHEK	skin

Quick Search: