Variant report

Variant	rs10873087
Chromosome Location	chr14:55565875-55565876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55564337..55568132-chr14:55580287..55582932,3	MCF-7	breast:
2	chr14:55562349..55566055-chr14:55567766..55570193,3	K562	blood:
3	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11158030	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11158031	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622128	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11625204	0.81[ASN][1000 genomes]
rs11626816	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627884	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11845087	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11845948	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2147963	0.84[ASN][1000 genomes]
rs61178993	0.82[ASN][1000 genomes]
rs66962212	0.82[ASN][1000 genomes]
rs66999765	0.81[ASN][1000 genomes]
rs67652508	0.82[ASN][1000 genomes]
rs67870023	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7144226	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7157678	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7494066	0.82[ASN][1000 genomes]
rs8015165	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8016295	0.82[ASN][1000 genomes]
rs873061	0.85[EUR][1000 genomes]
rs9671895	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411523	chr14:55565856-55566352	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10873087	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
2	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
3	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:55561800-55568400	Weak transcription	HMEC	breast
6	chr14:55561800-55568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:55562000-55566400	Weak transcription	NHLF	lung
8	chr14:55562000-55566600	Weak transcription	Osteobl	bone
9	chr14:55562000-55568800	Weak transcription	HSMM	muscle
10	chr14:55563800-55567200	Enhancers	Placenta	Placenta
11	chr14:55564000-55566000	Enhancers	Duodenum Mucosa	Duodenum
12	chr14:55564000-55566800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr14:55564000-55569000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:55564000-55569200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:55564000-55570200	Enhancers	Stomach Mucosa	stomach
16	chr14:55564200-55566000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:55564200-55566000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:55564200-55567000	Weak transcription	Lung	lung
19	chr14:55564200-55568400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:55564200-55568400	Weak transcription	Gastric	stomach
21	chr14:55564200-55568800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:55564200-55569000	Enhancers	Fetal Intestine Small	intestine
23	chr14:55564400-55566200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr14:55564400-55566800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr14:55564400-55569800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:55564800-55568600	Weak transcription	Brain Angular Gyrus	brain
27	chr14:55565000-55567200	Enhancers	Fetal Muscle Leg	muscle
28	chr14:55565000-55568600	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:55565000-55568600	Weak transcription	A549	lung
30	chr14:55565000-55568800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:55565200-55566400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:55565200-55566400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:55565200-55566400	Weak transcription	Adipose Nuclei	Adipose
34	chr14:55565200-55566400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:55565200-55566400	Weak transcription	HepG2	liver
36	chr14:55565200-55566400	Weak transcription	NHEK	skin
37	chr14:55565200-55567200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:55565200-55567800	Weak transcription	Colonic Mucosa	Colon
39	chr14:55565200-55568600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:55565200-55568600	Weak transcription	Brain Substantia Nigra	brain
41	chr14:55565200-55569000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr14:55565200-55569000	Weak transcription	Brain Anterior Caudate	brain
43	chr14:55565200-55570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:55565400-55566000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:55565400-55566400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:55565400-55566400	Weak transcription	Hela-S3	cervix
47	chr14:55565400-55566600	Weak transcription	Right Atrium	heart
48	chr14:55565400-55567800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:55565400-55568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:55565400-55568400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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