Variant report

Variant	rs8015165
Chromosome Location	chr14:55556252-55556253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55555953..55557008-chr14:55599894..55600889,11	MCF-7	breast:
2	chr14:55555965..55556955-chr14:55627418..55628329,6	K562	blood:
3	chr14:55556053..55556941-chr14:55627592..55628410,6	MCF-7	breast:
4	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
5	chr14:55551518..55553277-chr14:55554973..55556876,2	MCF-7	breast:
6	chr14:55555997..55556958-chr14:55600317..55600827,2	K562	blood:
7	chr14:55550347..55552515-chr14:55555863..55558677,2	K562	blood:
8	chr14:55555833..55558389-chr14:55562200..55563979,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10873087	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11158030	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11158031	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11622128	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625204	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11626816	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11627884	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11845087	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845948	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1187873	0.82[ASN][1000 genomes]
rs1187874	0.80[ASN][1000 genomes]
rs1212641	0.82[ASN][1000 genomes]
rs2147963	0.94[ASN][1000 genomes]
rs2340943	0.83[ASN][1000 genomes]
rs55843949	0.83[ASN][1000 genomes]
rs61178993	0.96[ASN][1000 genomes]
rs66962212	0.96[ASN][1000 genomes]
rs66999765	0.95[ASN][1000 genomes]
rs67652508	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs67870023	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144226	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7157678	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7494066	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8016295	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs873061	0.80[EUR][1000 genomes]
rs9671895	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8015165	C14orf32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:55545000-55561400	Weak transcription	HMEC	breast
6	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
7	chr14:55549200-55559800	Weak transcription	Ovary	ovary
8	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
10	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:55552200-55557000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach
15	chr14:55555000-55557600	Enhancers	NHEK	skin
16	chr14:55555600-55556600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:55556000-55556400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:55556000-55556400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr14:55556000-55556400	Enhancers	Brain Angular Gyrus	brain
20	chr14:55556000-55556400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr14:55556000-55556400	Enhancers	NHLF	lung
22	chr14:55556000-55556400	Flanking Active TSS	Osteobl	bone
23	chr14:55556000-55556600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:55556200-55556400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:55556200-55556400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:55556200-55556400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:55556200-55556400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr14:55556200-55556400	Enhancers	Brain Substantia Nigra	brain
29	chr14:55556200-55556400	Enhancers	Colonic Mucosa	Colon
30	chr14:55556200-55556400	Enhancers	Fetal Muscle Leg	muscle
31	chr14:55556200-55556400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr14:55556200-55556400	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr14:55556200-55556400	Enhancers	A549	lung
34	chr14:55556200-55556400	Enhancers	GM12878-XiMat	blood
35	chr14:55556200-55556400	Enhancers	HepG2	liver
36	chr14:55556200-55556400	Enhancers	HUVEC	blood vessel
37	chr14:55556200-55556400	Enhancers	NH-A	brain
38	chr14:55556200-55556600	Flanking Active TSS	Brain Anterior Caudate	brain
39	chr14:55556200-55556600	Active TSS	Brain Hippocampus Middle	brain
40	chr14:55556200-55556600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr14:55556200-55557600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr14:55556200-55560000	Enhancers	Fetal Intestine Small	intestine
43	chr14:55556200-55560200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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