Variant report

Variant	rs17832359
Chromosome Location	chr14:55615941-55615942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55517072..55520221-chr14:55614319..55617712,3	MCF-7	breast:
2	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
3	chr14:55517138..55519453-chr14:55614459..55616301,2	MCF-7	breast:
4	chr14:55492279..55493883-chr14:55615305..55616941,2	MCF-7	breast:
5	chr14:55532973..55535677-chr14:55615169..55617966,2	MCF-7	breast:
6	chr14:55568925..55571630-chr14:55613554..55616278,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198554	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1009977	0.96[EUR][1000 genomes]
rs1009978	0.94[EUR][1000 genomes]
rs10134800	0.86[EUR][1000 genomes]
rs10137409	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140857	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147667	0.93[EUR][1000 genomes]
rs10149435	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10438127	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1047556	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11621351	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622636	0.95[ASN][1000 genomes]
rs11622740	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs15870	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128183	0.87[EUR][1000 genomes]
rs17253695	0.82[ASN][1000 genomes]
rs17672058	0.95[ASN][1000 genomes]
rs17672364	0.81[ASN][1000 genomes]
rs1815316	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075601	0.91[EUR][1000 genomes]
rs2075602	0.91[EUR][1000 genomes]
rs2075603	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094102	0.96[EUR][1000 genomes]
rs2094436	0.95[ASN][1000 genomes]
rs2147970	0.95[ASN][1000 genomes]
rs2147972	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2182207	0.92[ASN][1000 genomes]
rs2296489	0.96[ASN][1000 genomes]
rs2340931	0.94[EUR][1000 genomes]
rs2340936	0.94[ASN][1000 genomes]
rs28429419	0.89[EUR][1000 genomes]
rs3742566	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3759667	0.95[ASN][1000 genomes]
rs3818451	0.82[EUR][1000 genomes]
rs3825613	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4040064	0.86[ASN][1000 genomes]
rs4525413	0.89[ASN][1000 genomes]
rs4644	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652	0.88[EUR][1000 genomes]
rs55710823	0.93[ASN][1000 genomes]
rs56660630	0.85[EUR][1000 genomes]
rs57033289	0.98[ASN][1000 genomes]
rs57970196	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58269011	0.86[ASN][1000 genomes]
rs61508494	0.96[EUR][1000 genomes]
rs6573005	0.96[EUR][1000 genomes]
rs6573006	0.96[EUR][1000 genomes]
rs6573007	0.91[EUR][1000 genomes]
rs66476033	0.95[ASN][1000 genomes]
rs66531545	0.90[ASN][1000 genomes]
rs66782529	0.93[ASN][1000 genomes]
rs66842809	0.95[ASN][1000 genomes]
rs66871576	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67008693	0.83[ASN][1000 genomes]
rs67092614	0.95[ASN][1000 genomes]
rs67098772	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67215571	0.95[ASN][1000 genomes]
rs67395212	0.92[ASN][1000 genomes]
rs67416413	0.83[ASN][1000 genomes]
rs67588230	0.95[ASN][1000 genomes]
rs67756714	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67805055	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67958555	0.95[ASN][1000 genomes]
rs7140872	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142704	0.94[EUR][1000 genomes]
rs7147106	0.83[EUR][1000 genomes]
rs7159808	0.91[EUR][1000 genomes]
rs7160110	0.96[EUR][1000 genomes]
rs7160523	0.91[EUR][1000 genomes]
rs72718804	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7493394	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8004787	0.91[EUR][1000 genomes]
rs8007614	0.90[EUR][1000 genomes]
rs8007620	0.91[EUR][1000 genomes]
rs8007944	0.88[EUR][1000 genomes]
rs8009670	0.89[EUR][1000 genomes]
rs8011834	0.96[EUR][1000 genomes]
rs8013027	0.98[EUR][1000 genomes]
rs8018110	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17832359	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55604400-55620800	Weak transcription	K562	blood
4	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:55604800-55616200	Strong transcription	HMEC	breast
6	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:55605000-55616600	Strong transcription	Osteobl	bone
8	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
11	chr14:55606400-55626600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:55608000-55616800	Weak transcription	Stomach Mucosa	stomach
18	chr14:55610000-55617800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:55610600-55621600	Strong transcription	GM12878-XiMat	blood
20	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:55610600-55655600	Strong transcription	Dnd41	blood
23	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:55611000-55616400	Strong transcription	HUVEC	blood vessel
25	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
26	chr14:55611200-55622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:55611400-55621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr14:55611600-55620000	Weak transcription	Fetal Stomach	stomach
31	chr14:55611600-55628400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:55611600-55630000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:55611800-55620000	Weak transcription	Fetal Muscle Leg	muscle
35	chr14:55612000-55619000	Weak transcription	HSMMtube	muscle
36	chr14:55612000-55621000	Weak transcription	Fetal Lung	lung
37	chr14:55612000-55622000	Weak transcription	Small Intestine	intestine
38	chr14:55612000-55623200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr14:55613000-55616400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:55613000-55621800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr14:55613400-55616600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:55613400-55617000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:55613400-55619000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr14:55613400-55621800	Weak transcription	Left Ventricle	heart
46	chr14:55613400-55626200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
48	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr14:55613600-55618600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:55614000-55619000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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