Variant report

Variant	rs60972460
Chromosome Location	chr14:55571773-55571774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
2	chr14:55570137..55572731-chr14:55581864..55585022,3	MCF-7	breast:
3	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
4	chr14:55569932..55572391-chr14:55657772..55659443,2	K562	blood:
5	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
6	chr14:55570108..55572293-chr14:55641654..55643309,2	K562	blood:
7	chr14:55516736..55518546-chr14:55570715..55573579,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction
ENSG00000126787	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1009977	0.81[EUR][1000 genomes]
rs1009978	0.82[EUR][1000 genomes]
rs10134800	0.83[EUR][1000 genomes]
rs10147667	0.85[EUR][1000 genomes]
rs17128183	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2075601	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2075602	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2094102	0.81[EUR][1000 genomes]
rs2340931	0.82[EUR][1000 genomes]
rs28429419	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56660630	0.83[EUR][1000 genomes]
rs61508494	0.80[EUR][1000 genomes]
rs6573005	0.81[EUR][1000 genomes]
rs6573006	0.81[EUR][1000 genomes]
rs6573007	0.86[EUR][1000 genomes]
rs7142704	0.81[EUR][1000 genomes]
rs7159808	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7160110	0.81[EUR][1000 genomes]
rs7160523	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8004787	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8007614	0.83[EUR][1000 genomes]
rs8007620	0.84[EUR][1000 genomes]
rs8007944	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8009670	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8011834	0.81[EUR][1000 genomes]
rs8013027	0.80[EUR][1000 genomes]
rs8018110	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55566600-55571800	Enhancers	Small Intestine	intestine
2	chr14:55568000-55572200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:55569200-55572800	Weak transcription	Ovary	ovary
6	chr14:55569200-55574800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:55569200-55574800	Weak transcription	Gastric	stomach
8	chr14:55570000-55571800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
10	chr14:55570200-55574000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:55570400-55571800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:55570400-55571800	ZNF genes & repeats	K562	blood
13	chr14:55570400-55572000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:55570400-55572200	Enhancers	Colonic Mucosa	Colon
15	chr14:55570400-55572800	Weak transcription	Aorta	Aorta
16	chr14:55570400-55574200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:55570400-55575800	Enhancers	Fetal Intestine Small	intestine
18	chr14:55570800-55571800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:55570800-55571800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:55570800-55571800	ZNF genes & repeats	NHEK	skin
21	chr14:55570800-55572400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:55570800-55574200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:55570800-55574200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:55570800-55574400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:55570800-55574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:55571000-55571800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:55571000-55572600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:55571000-55574200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:55571000-55574400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr14:55571000-55574400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr14:55571000-55574800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:55571000-55574800	Weak transcription	Psoas Muscle	Psoas
33	chr14:55571200-55571800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr14:55571200-55572400	Weak transcription	Fetal Heart	heart
35	chr14:55571200-55572600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:55571200-55572600	Weak transcription	Right Ventricle	heart
37	chr14:55571200-55573800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:55571200-55574200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:55571200-55574200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:55571200-55574200	Weak transcription	Brain Anterior Caudate	brain
41	chr14:55571200-55575000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr14:55571400-55571800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:55571400-55572600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:55571400-55572600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:55571400-55574000	Weak transcription	HUVEC	blood vessel
46	chr14:55571400-55574200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:55571400-55574200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:55571400-55574200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:55571400-55574400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:55571600-55571800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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