Variant report

Variant	rs58553156
Chromosome Location	chr14:55582694-55582695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55581319..55583410-chr14:55588984..55591467,2	K562	blood:
2	chr14:55577758..55579306-chr14:55580638..55583471,2	MCF-7	breast:
3	chr14:55564337..55568132-chr14:55580287..55582932,3	MCF-7	breast:
4	chr14:55582371..55584730-chr14:55586498..55588100,2	K562	blood:
5	chr14:55518099..55519686-chr14:55582023..55584593,2	K562	blood:
6	chr14:55572892..55577828-chr14:55580219..55584664,6	K562	blood:
7	chr14:55570137..55572731-chr14:55581864..55585022,3	MCF-7	breast:
8	chr14:55574863..55577240-chr14:55578769..55582897,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction

rs_ID	r²[population]
rs10147667	0.87[ASN][1000 genomes]
rs11622636	0.90[EUR][1000 genomes]
rs17253695	0.98[EUR][1000 genomes]
rs17672058	0.88[EUR][1000 genomes]
rs2094436	0.88[EUR][1000 genomes]
rs2147970	0.88[EUR][1000 genomes]
rs2182207	0.96[EUR][1000 genomes]
rs2296489	0.94[EUR][1000 genomes]
rs2340936	0.87[EUR][1000 genomes]
rs3759667	0.88[EUR][1000 genomes]
rs4525413	0.86[EUR][1000 genomes]
rs55710823	0.94[EUR][1000 genomes]
rs57033289	0.94[EUR][1000 genomes]
rs66476033	0.88[EUR][1000 genomes]
rs66531545	0.96[EUR][1000 genomes]
rs66782529	0.95[EUR][1000 genomes]
rs66842809	0.92[EUR][1000 genomes]
rs67092614	0.88[EUR][1000 genomes]
rs67215571	0.88[EUR][1000 genomes]
rs67395212	0.96[EUR][1000 genomes]
rs67588230	0.88[EUR][1000 genomes]
rs67958555	0.88[EUR][1000 genomes]
rs68083077	0.98[EUR][1000 genomes]
rs8007614	0.95[ASN][1000 genomes]
rs8007620	0.96[ASN][1000 genomes]
rs8013027	0.89[ASN][1000 genomes]

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55575000-55589600	Weak transcription	Small Intestine	intestine
3	chr14:55575200-55583000	Weak transcription	Gastric	stomach
4	chr14:55575200-55584400	Weak transcription	Esophagus	oesophagus
5	chr14:55575600-55584600	Weak transcription	Ovary	ovary
6	chr14:55575800-55584800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:55576800-55582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:55576800-55584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
10	chr14:55578200-55584600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:55578400-55583400	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:55578400-55584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:55578400-55588000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr14:55579200-55583200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:55580200-55589000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:55580600-55585200	Enhancers	Duodenum Mucosa	Duodenum
17	chr14:55580800-55583200	Enhancers	HepG2	liver
18	chr14:55581000-55583600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr14:55581400-55582800	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr14:55581400-55585600	Enhancers	Stomach Mucosa	stomach
21	chr14:55581600-55582800	Enhancers	Spleen	Spleen
22	chr14:55581600-55583800	Enhancers	Pancreas	Pancrea
23	chr14:55581600-55584600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr14:55582000-55583600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:55582000-55583600	Enhancers	Fetal Heart	heart
26	chr14:55582000-55585600	Enhancers	Left Ventricle	heart
27	chr14:55582200-55583000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr14:55582200-55583600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:55582200-55583800	Enhancers	Lung	lung
30	chr14:55582200-55584600	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr14:55582200-55585600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr14:55582200-55585800	Enhancers	K562	blood
33	chr14:55582200-55588200	Enhancers	Right Atrium	heart
34	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr14:55582400-55583000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:55582400-55583400	Weak transcription	Right Ventricle	heart
37	chr14:55582400-55583600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:55582400-55584600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:55582400-55589000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:55582600-55583200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr14:55582600-55584600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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