Variant report

Variant	rs56099345
Chromosome Location	chr6:114250641-114250642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1964139	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4391288	0.85[ASN][1000 genomes]
rs59916863	0.92[ASN][1000 genomes]
rs62415875	0.86[ASN][1000 genomes]
rs62415924	0.84[ASN][1000 genomes]
rs62415925	0.84[ASN][1000 genomes]
rs6568819	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6907834	0.86[ASN][1000 genomes]
rs6912132	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72948641	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7742680	0.86[ASN][1000 genomes]
rs9481408	0.86[ASN][1000 genomes]
rs9488289	0.86[ASN][1000 genomes]
rs9488292	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114242400-114265400	Weak transcription	Thymus	Thymus
2	chr6:114242600-114261000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:114242800-114260200	Weak transcription	HepG2	liver
4	chr6:114246000-114260200	Weak transcription	HUVEC	blood vessel
5	chr6:114246200-114254000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:114248600-114265400	Weak transcription	Fetal Heart	heart
7	chr6:114248800-114258800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:114250400-114250800	ZNF genes & repeats	Left Ventricle	heart
9	chr6:114250400-114251800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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