Variant report
| Variant | rs6912132 |
|---|---|
| Chromosome Location | chr6:114303062-114303063 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:114301698..114303779-chr6:114304752..114306956,2 | MCF-7 | breast: | |
| 2 | chr6:114295116..114298801-chr6:114302591..114304550,3 | K562 | blood: | |
| 3 | chr6:114296445..114297947-chr6:114301114..114303328,2 | MCF-7 | breast: | |
| 4 | chr6:114291929..114293814-chr6:114301420..114303609,2 | MCF-7 | breast: | |
| 5 | chr6:114295116..114299267-chr6:114302735..114304550,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000196591 | Chromatin interaction |
| ENSG00000228624 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10499080 | 0.82[YRI][hapmap] |
| rs1964139 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4391288 | 0.89[ASN][1000 genomes] |
| rs56099345 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs58677352 | 0.81[AFR][1000 genomes] |
| rs59916863 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62415875 | 0.82[ASN][1000 genomes] |
| rs62415924 | 0.88[ASN][1000 genomes] |
| rs62415925 | 0.88[ASN][1000 genomes] |
| rs6568819 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6907834 | 0.88[ASN][1000 genomes] |
| rs6913161 | 0.81[ASN][1000 genomes] |
| rs72948641 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7742680 | 0.82[ASN][1000 genomes] |
| rs9481408 | 0.80[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs9488289 | 0.80[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs9488292 | 0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021774 | chr6:114063971-114407280 | Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
| 2 | nsv538422 | chr6:114063971-114407280 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
| 3 | nsv520419 | chr6:114285253-114306614 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:114302400-114307400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr6:114303000-114303200 | Enhancers | HSMMtube | muscle |
