Variant report

Variant	rs58677352
Chromosome Location	chr6:114293989-114293990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10499080	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17075722	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6908846	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6912132	0.81[AFR][1000 genomes]
rs6920181	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv520419	chr6:114285253-114306614	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114293000-114294000	Enhancers	Gastric	stomach
2	chr6:114293000-114294000	Flanking Active TSS	K562	blood
3	chr6:114293000-114297600	Weak transcription	Psoas Muscle	Psoas
4	chr6:114293200-114294000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:114293200-114294400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr6:114293200-114296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:114293200-114296400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:114293400-114294600	Enhancers	Dnd41	blood
9	chr6:114293400-114295600	Weak transcription	HepG2	liver
10	chr6:114293400-114295800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:114293400-114297200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:114293400-114298400	Weak transcription	Pancreas	Pancrea
13	chr6:114293400-114299400	Weak transcription	Osteobl	bone
14	chr6:114293400-114300600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:114293400-114301000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:114293600-114294000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:114293800-114294000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:114293800-114294000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:114293800-114294000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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