Variant report

Variant	rs6908846
Chromosome Location	chr6:114267377-114267378
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114267271..114269287-chr6:114290373..114293087,3	MCF-7	breast:
2	chr6:114260142..114261684-chr6:114265096..114267766,2	K562	blood:

Variant related genes	Relation type
ENSG00000228624	Chromatin interaction
ENSG00000196591	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10499080	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13217548	0.89[AFR][1000 genomes]
rs17075682	0.87[YRI][hapmap]
rs17075722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58677352	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6900496	1.00[CEU][hapmap]
rs6917232	0.87[YRI][hapmap]
rs6920181	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114253000-114289800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:114253400-114290600	Weak transcription	Aorta	Aorta
3	chr6:114254000-114267800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:114254000-114271400	Weak transcription	Stomach Mucosa	stomach
5	chr6:114254600-114281800	Strong transcription	Dnd41	blood
6	chr6:114255400-114281600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:114255600-114276600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:114256600-114270000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:114258200-114267400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:114258400-114267400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:114258400-114274200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:114258400-114279600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:114258600-114267400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr6:114258600-114267600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:114258600-114268000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:114258600-114270200	Strong transcription	Liver	Liver
17	chr6:114258600-114282600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:114258600-114291000	Weak transcription	Lung	lung
19	chr6:114258800-114267400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:114258800-114270600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:114258800-114279600	Strong transcription	Fetal Intestine Large	intestine
22	chr6:114258800-114281000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:114258800-114281600	Weak transcription	Gastric	stomach
24	chr6:114258800-114285600	Weak transcription	Right Ventricle	heart
25	chr6:114258800-114289800	Weak transcription	Spleen	Spleen
26	chr6:114259000-114289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:114259200-114267400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:114259400-114267400	Strong transcription	Placenta	Placenta
29	chr6:114259400-114267600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr6:114259400-114268000	Strong transcription	Osteobl	bone
31	chr6:114259400-114269600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:114259400-114279800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:114259400-114281400	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:114259600-114279600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr6:114259600-114281000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr6:114259800-114267400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:114259800-114267400	Strong transcription	Fetal Brain Female	brain
38	chr6:114259800-114274200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:114259800-114274400	Strong transcription	HSMM	muscle
40	chr6:114259800-114280000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:114259800-114280600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:114259800-114280600	Strong transcription	Fetal Thymus	thymus
43	chr6:114259800-114280800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:114259800-114280800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:114259800-114281000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:114260000-114267400	Strong transcription	Adipose Nuclei	Adipose
47	chr6:114260000-114267400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:114260000-114267400	Strong transcription	HMEC	breast
49	chr6:114260000-114267600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:114260000-114267600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links