Variant report

Variant	rs56102000
Chromosome Location	chr6:167440901-167440902
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:167433967..167438012-chr6:167438507..167442863,4	K562	blood:
2	chr6:167410835..167412636-chr6:167439042..167441228,2	K562	blood:
3	chr6:167438895..167441335-chr6:167445093..167449039,4	K562	blood:

Variant related genes	Relation type
ENSG00000213066	Chromatin interaction
ENSG00000265828	Chromatin interaction
ENSG00000227598	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv464140	chr6:167426681-167492552	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv886943	chr6:167440244-167502638	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167413600-167449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:167413600-167452400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:167414600-167441000	Weak transcription	Psoas Muscle	Psoas
4	chr6:167414600-167448000	Weak transcription	Small Intestine	intestine
5	chr6:167414600-167450200	Weak transcription	Stomach Mucosa	stomach
6	chr6:167415400-167454000	Strong transcription	Fetal Thymus	thymus
7	chr6:167415400-167456600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:167416000-167444600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:167417200-167455400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:167417600-167443000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr6:167417600-167446000	Strong transcription	Dnd41	blood
12	chr6:167417600-167454800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:167417800-167455200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:167420800-167447600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:167423000-167446400	Strong transcription	HepG2	liver
16	chr6:167423000-167457600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:167423400-167446400	Strong transcription	Liver	Liver
18	chr6:167423400-167452200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr6:167424000-167442600	Strong transcription	K562	blood
20	chr6:167424800-167442000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:167425600-167441000	Weak transcription	NHLF	lung
22	chr6:167425600-167453000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:167426600-167450600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:167429200-167441400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:167429200-167447600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:167429400-167441600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:167431400-167444600	Strong transcription	Osteobl	bone
28	chr6:167431600-167441600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:167432200-167450200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:167434200-167450600	Strong transcription	GM12878-XiMat	blood
31	chr6:167434600-167441800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:167434800-167442800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:167434800-167445600	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr6:167434800-167452000	Strong transcription	Primary T cells from cord blood	blood
35	chr6:167435000-167445800	Strong transcription	Fetal Intestine Large	intestine
36	chr6:167435200-167443000	Strong transcription	Primary B cells from cord blood	blood
37	chr6:167435400-167446000	Strong transcription	Primary B cells from peripheral blood	blood
38	chr6:167435600-167444600	Strong transcription	Fetal Brain Female	brain
39	chr6:167435800-167442000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr6:167435800-167445200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr6:167435800-167445400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr6:167435800-167445600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr6:167435800-167445800	Strong transcription	Fetal Muscle Leg	muscle
44	chr6:167435800-167452200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:167436000-167441800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:167436200-167441600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:167436200-167442000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:167436200-167442600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:167436200-167450200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr6:167436400-167442000	Strong transcription	Fetal Lung	lung

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