Variant report

Variant	rs561022
Chromosome Location	chr9:73434921-73434922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10780978	0.97[GIH][hapmap]
rs10868909	0.90[CEU][hapmap]
rs4412420	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs505107	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs506067	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs529897	0.92[ASN][1000 genomes]
rs532855	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs537414	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs564929	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7038646	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs561022	SMC5	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73411200-73437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73418200-73444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:73418200-73447400	Weak transcription	Fetal Kidney	kidney
4	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
5	chr9:73429400-73438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73429600-73440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:73430800-73437800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr9:73432200-73438400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:73432200-73438400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73432400-73436600	Weak transcription	Fetal Heart	heart
11	chr9:73434200-73439000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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