Variant report

Variant	rs56104183
Chromosome Location	chr2:183370620-183370621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11674733	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11676428	0.81[ASN][1000 genomes]
rs11677136	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11677155	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11677310	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11677543	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11677709	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11678901	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11678948	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11695445	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1367201	0.88[ASN][1000 genomes]
rs17265322	0.96[ASN][1000 genomes]
rs17265384	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55672010	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55807818	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55966320	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56022400	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56044563	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56146343	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56178953	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56303969	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56410062	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56659344	0.81[ASN][1000 genomes]
rs56793665	0.84[AMR][1000 genomes]
rs58161256	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58786868	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60122505	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61184260	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61351360	0.85[ASN][1000 genomes]
rs66469653	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66523825	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66557124	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66769715	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs66951643	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67163218	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67260808	0.80[ASN][1000 genomes]
rs67274701	0.84[ASN][1000 genomes]
rs67361657	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6748063	0.96[ASN][1000 genomes]
rs67483153	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6751461	0.96[ASN][1000 genomes]
rs67586805	0.80[ASN][1000 genomes]
rs6760333	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67611077	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67824266	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67977270	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs68074868	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs68153794	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72885197	0.96[ASN][1000 genomes]
rs72886952	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72890801	0.80[ASN][1000 genomes]
rs72892706	0.87[ASN][1000 genomes]
rs72892747	0.91[ASN][1000 genomes]
rs73044449	0.85[ASN][1000 genomes]
rs73046445	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7563205	0.86[ASN][1000 genomes]
rs7584728	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3460937	chr2:183370439-183372447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3460938	chr2:183370439-183372447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3435176	chr2:183370513-183372162	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv821839	chr2:183370578-183372061	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv821840	chr2:183370578-183372588	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183365600-183371400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:183367800-183373800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:183368000-183371600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:183368200-183372800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:183368400-183370800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183368400-183371400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:183368600-183370800	Enhancers	Osteobl	bone
9	chr2:183369600-183372000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:183370000-183371200	Weak transcription	NHDF-Ad	bronchial
11	chr2:183370200-183371400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:183370200-183371400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:183370200-183371400	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:183370200-183371400	Weak transcription	NHLF	lung
15	chr2:183370400-183371400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:183370600-183370800	Enhancers	HUES64 Cell Line	embryonic stem cell

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