Variant report

Variant	rs72892747
Chromosome Location	chr2:183409112-183409113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183407157..183409269-chr2:183412477..183414356,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11674733	0.91[ASN][1000 genomes]
rs11676428	0.83[EUR][1000 genomes]
rs11677136	0.83[EUR][1000 genomes]
rs11677155	0.83[EUR][1000 genomes]
rs11677310	0.83[EUR][1000 genomes]
rs11677543	0.83[EUR][1000 genomes]
rs11677709	0.83[EUR][1000 genomes]
rs11678901	0.91[ASN][1000 genomes]
rs11678948	0.91[ASN][1000 genomes]
rs11690729	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11695445	0.91[ASN][1000 genomes]
rs1367201	0.80[ASN][1000 genomes]
rs17265322	0.87[ASN][1000 genomes]
rs17265384	0.91[ASN][1000 genomes]
rs17356575	0.81[EUR][1000 genomes]
rs35960621	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55672010	0.83[EUR][1000 genomes]
rs55807818	0.83[EUR][1000 genomes]
rs55966320	0.83[EUR][1000 genomes]
rs56022400	0.83[EUR][1000 genomes]
rs56044563	0.83[EUR][1000 genomes]
rs56104183	0.91[ASN][1000 genomes]
rs56146343	0.83[EUR][1000 genomes]
rs56178953	0.83[EUR][1000 genomes]
rs56303969	0.83[EUR][1000 genomes]
rs56410062	0.83[EUR][1000 genomes]
rs58161256	0.83[EUR][1000 genomes]
rs58786868	0.83[EUR][1000 genomes]
rs59453757	0.83[EUR][1000 genomes]
rs60122505	0.83[EUR][1000 genomes]
rs60420748	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61184260	0.83[EUR][1000 genomes]
rs61351360	0.83[EUR][1000 genomes]
rs66469653	0.83[EUR][1000 genomes]
rs66523825	0.83[EUR][1000 genomes]
rs66557124	0.83[EUR][1000 genomes]
rs66769715	0.83[EUR][1000 genomes]
rs66951643	0.83[EUR][1000 genomes]
rs67163218	0.81[EUR][1000 genomes]
rs67260808	0.83[EUR][1000 genomes]
rs67274701	0.83[EUR][1000 genomes]
rs67361657	0.83[EUR][1000 genomes]
rs6748063	0.87[ASN][1000 genomes]
rs67483153	0.83[EUR][1000 genomes]
rs6751461	0.87[ASN][1000 genomes]
rs67586805	0.83[EUR][1000 genomes]
rs6760333	0.87[ASN][1000 genomes]
rs67611077	0.83[EUR][1000 genomes]
rs67824266	0.83[EUR][1000 genomes]
rs67977270	0.83[EUR][1000 genomes]
rs68074868	0.83[EUR][1000 genomes]
rs68153794	0.83[EUR][1000 genomes]
rs72885197	0.87[ASN][1000 genomes]
rs72886952	0.91[ASN][1000 genomes]
rs72892706	0.83[EUR][1000 genomes]
rs72892739	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72892751	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72892758	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72892780	0.81[EUR][1000 genomes]
rs72894609	0.83[EUR][1000 genomes]
rs72894613	0.83[EUR][1000 genomes]
rs73044449	0.83[EUR][1000 genomes]
rs73046445	0.83[EUR][1000 genomes]
rs7563205	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7563329	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7584728	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183404200-183411800	Weak transcription	Fetal Brain Male	brain
2	chr2:183407400-183413800	Enhancers	HUVEC	blood vessel
3	chr2:183407800-183412800	Weak transcription	Fetal Lung	lung
4	chr2:183407800-183413200	Weak transcription	NHLF	lung
5	chr2:183408000-183412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183408000-183412800	Weak transcription	Osteobl	bone
7	chr2:183408200-183409400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:183408200-183409800	Weak transcription	HSMMtube	muscle
9	chr2:183408400-183409400	Weak transcription	HSMM	muscle
10	chr2:183408400-183411200	Enhancers	Colon Smooth Muscle	Colon
11	chr2:183408400-183412800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:183408600-183409600	Enhancers	Ovary	ovary
13	chr2:183408600-183410800	Enhancers	Rectal Smooth Muscle	rectum
14	chr2:183408800-183409200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr2:183408800-183409800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:183408800-183410400	Enhancers	Fetal Stomach	stomach
17	chr2:183409000-183409200	Weak transcription	GM12878-XiMat	blood

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