Variant report

Variant	rs72892751
Chromosome Location	chr2:183415394-183415395
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10182788	0.90[ASN][1000 genomes]
rs11676428	0.80[EUR][1000 genomes]
rs11677136	0.80[EUR][1000 genomes]
rs11677155	0.80[EUR][1000 genomes]
rs11677310	0.80[EUR][1000 genomes]
rs11677543	0.80[EUR][1000 genomes]
rs11677709	0.80[EUR][1000 genomes]
rs11690729	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17265531	0.81[EUR][1000 genomes]
rs17356575	0.84[EUR][1000 genomes]
rs35960621	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4666588	0.90[ASN][1000 genomes]
rs55672010	0.80[EUR][1000 genomes]
rs55807818	0.80[EUR][1000 genomes]
rs55966320	0.80[EUR][1000 genomes]
rs56022400	0.80[EUR][1000 genomes]
rs56044563	0.80[EUR][1000 genomes]
rs56146343	0.80[EUR][1000 genomes]
rs56178953	0.80[EUR][1000 genomes]
rs56303969	0.80[EUR][1000 genomes]
rs56410062	0.80[EUR][1000 genomes]
rs58161256	0.80[EUR][1000 genomes]
rs58786868	0.80[EUR][1000 genomes]
rs59453757	0.80[EUR][1000 genomes]
rs60122505	0.80[EUR][1000 genomes]
rs60420748	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61184260	0.80[EUR][1000 genomes]
rs61351360	0.80[EUR][1000 genomes]
rs66469653	0.80[EUR][1000 genomes]
rs66523825	0.80[EUR][1000 genomes]
rs66557124	0.80[EUR][1000 genomes]
rs66769715	0.80[EUR][1000 genomes]
rs66951643	0.80[EUR][1000 genomes]
rs6711313	0.90[ASN][1000 genomes]
rs67260808	0.80[EUR][1000 genomes]
rs67274701	0.80[EUR][1000 genomes]
rs67361657	0.80[EUR][1000 genomes]
rs6747954	0.93[ASN][1000 genomes]
rs67483153	0.80[EUR][1000 genomes]
rs67586805	0.80[EUR][1000 genomes]
rs67611077	0.80[EUR][1000 genomes]
rs67824266	0.80[EUR][1000 genomes]
rs67977270	0.80[EUR][1000 genomes]
rs68074868	0.80[EUR][1000 genomes]
rs68153794	0.80[EUR][1000 genomes]
rs72892706	0.80[EUR][1000 genomes]
rs72892739	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892747	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72892758	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72892780	0.84[EUR][1000 genomes]
rs72894609	0.86[EUR][1000 genomes]
rs72894613	0.86[EUR][1000 genomes]
rs72894626	0.81[EUR][1000 genomes]
rs72894643	0.81[EUR][1000 genomes]
rs73044449	0.80[EUR][1000 genomes]
rs73046445	0.80[EUR][1000 genomes]
rs7563205	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7563329	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7584728	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183411600-183416000	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:183413600-183416200	Weak transcription	Brain Anterior Caudate	brain
3	chr2:183413800-183416200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:183413800-183416200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:183414800-183415400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:183415000-183415400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:183415000-183415600	Enhancers	Adipose Nuclei	Adipose
8	chr2:183415000-183416600	Enhancers	Brain Angular Gyrus	brain
9	chr2:183415000-183416800	Enhancers	Brain Cingulate Gyrus	brain
10	chr2:183415000-183417000	Enhancers	Brain Substantia Nigra	brain

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