Variant report

Variant	rs56104325
Chromosome Location	chr15:75139092-75139093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75118538..75120714-chr15:75135771..75139266,4	K562	blood:
2	chr15:75135427..75140750-chr15:75141950..75147054,10	K562	blood:
3	chr15:75134049..75139648-chr15:75161531..75167020,13	MCF-7	breast:
4	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
5	chr15:75131716..75139878-chr15:75227772..75233177,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000260824	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16973048	0.95[AFR][1000 genomes]
rs34945944	0.93[AFR][1000 genomes]
rs60757109	0.95[AFR][1000 genomes]
rs74025851	0.87[AFR][1000 genomes]
rs74025852	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv904382	chr15:75129594-75140854	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75135800-75139800	Weak transcription	Small Intestine	intestine
2	chr15:75136200-75139600	Weak transcription	Stomach Mucosa	stomach
3	chr15:75136200-75140000	Weak transcription	Ovary	ovary
4	chr15:75136200-75144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:75136200-75155800	Weak transcription	NH-A	brain
6	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
8	chr15:75136400-75139200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:75136400-75139600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:75136400-75139800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:75136400-75139800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:75136400-75139800	Weak transcription	Right Atrium	heart
13	chr15:75136400-75139800	Weak transcription	HMEC	breast
14	chr15:75136400-75139800	Weak transcription	Osteobl	bone
15	chr15:75136400-75140000	Weak transcription	Psoas Muscle	Psoas
16	chr15:75136400-75142000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:75136400-75142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:75136400-75145400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:75136400-75147200	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:75136400-75149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
22	chr15:75136600-75139800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:75136600-75140200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:75136600-75142000	Weak transcription	HSMM	muscle
25	chr15:75136600-75142600	Weak transcription	HUVEC	blood vessel
26	chr15:75136600-75145800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:75136600-75146200	Strong transcription	A549	lung
28	chr15:75136600-75146600	Strong transcription	Brain Angular Gyrus	brain
29	chr15:75136600-75146800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:75136600-75146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:75136600-75147200	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
33	chr15:75136800-75139400	Strong transcription	Right Ventricle	heart
34	chr15:75136800-75139600	Weak transcription	Fetal Heart	heart
35	chr15:75136800-75139800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr15:75136800-75139800	Strong transcription	Liver	Liver
37	chr15:75136800-75140000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr15:75136800-75140200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:75136800-75142400	Strong transcription	Fetal Intestine Large	intestine
40	chr15:75136800-75142800	Weak transcription	K562	blood
41	chr15:75136800-75143000	Strong transcription	HepG2	liver
42	chr15:75136800-75143400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr15:75136800-75143800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:75136800-75144200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:75136800-75146600	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:75136800-75147000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:75136800-75147000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:75136800-75147200	Strong transcription	Colonic Mucosa	Colon
49	chr15:75137000-75139400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr15:75137000-75139600	Weak transcription	Colon Smooth Muscle	Colon

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