Variant report

Variant	rs60757109
Chromosome Location	chr15:75141129-75141130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75135715..75138276-chr15:75139819..75143025,6	K562	blood:
2	chr15:75139250..75141212-chr15:75142432..75144699,2	K562	blood:
3	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178761	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000260824	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16973048	1.00[AFR][1000 genomes]
rs34945944	0.98[AFR][1000 genomes]
rs56104325	0.95[AFR][1000 genomes]
rs61671857	0.82[AFR][1000 genomes]
rs74025850	0.82[AFR][1000 genomes]
rs74025851	0.91[AFR][1000 genomes]
rs74025852	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:75136200-75155800	Weak transcription	NH-A	brain
3	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
5	chr15:75136400-75142000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:75136400-75142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:75136400-75145400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:75136400-75147200	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:75136400-75149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
11	chr15:75136600-75142000	Weak transcription	HSMM	muscle
12	chr15:75136600-75142600	Weak transcription	HUVEC	blood vessel
13	chr15:75136600-75145800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:75136600-75146200	Strong transcription	A549	lung
15	chr15:75136600-75146600	Strong transcription	Brain Angular Gyrus	brain
16	chr15:75136600-75146800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:75136600-75146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:75136600-75147200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
20	chr15:75136800-75142400	Strong transcription	Fetal Intestine Large	intestine
21	chr15:75136800-75142800	Weak transcription	K562	blood
22	chr15:75136800-75143000	Strong transcription	HepG2	liver
23	chr15:75136800-75143400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr15:75136800-75143800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:75136800-75144200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:75136800-75146600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:75136800-75147000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:75136800-75147000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:75136800-75147200	Strong transcription	Colonic Mucosa	Colon
30	chr15:75137000-75142400	Strong transcription	Fetal Intestine Small	intestine
31	chr15:75137000-75146400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:75137000-75146800	Strong transcription	Brain Germinal Matrix	brain
33	chr15:75137000-75147000	Strong transcription	Dnd41	blood
34	chr15:75137000-75147200	Strong transcription	Lung	lung
35	chr15:75137000-75147400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr15:75137000-75149800	Strong transcription	Fetal Stomach	stomach
37	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:75137200-75141400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:75137200-75141400	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr15:75137200-75146800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:75137200-75147200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:75137200-75147200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:75137200-75147200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:75137400-75146400	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr15:75137400-75146800	Strong transcription	Brain Hippocampus Middle	brain
46	chr15:75137400-75147400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:75137400-75150600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr15:75137600-75142200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:75137600-75147200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:75137600-75147200	Strong transcription	Placenta	Placenta

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