Variant report

Variant	rs56104955
Chromosome Location	chr7:99148281-99148282
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99101340..99103722-chr7:99148139..99149970,3	K562	blood:
2	chr7:99147270..99151762-chr7:99212930..99216791,5	MCF-7	breast:
3	chr7:99143301..99146119-chr7:99146744..99149736,4	MCF-7	breast:
4	chr7:99102097..99103970-chr7:99147746..99149891,2	MCF-7	breast:
5	chr7:99101316..99104105-chr7:99146810..99149778,3	MCF-7	breast:
6	chr7:99147703..99150655-chr7:99214369..99216200,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196652	Chromatin interaction
ENSG00000197037	Chromatin interaction

rs_ID	r²[population]
rs55668841	1.00[AFR][1000 genomes]
rs55942015	1.00[AFR][1000 genomes]
rs56145748	1.00[AFR][1000 genomes]
rs56992635	1.00[AFR][1000 genomes]
rs57467259	1.00[AFR][1000 genomes]
rs58586429	1.00[AFR][1000 genomes]
rs59346440	1.00[AFR][1000 genomes]
rs60206309	1.00[AFR][1000 genomes]
rs61283116	1.00[AFR][1000 genomes]
rs73709640	1.00[AMR][1000 genomes]
rs73710445	0.86[AFR][1000 genomes]
rs73710452	1.00[AFR][1000 genomes]
rs73710453	1.00[AFR][1000 genomes]
rs73711210	1.00[AFR][1000 genomes]
rs73711213	1.00[AFR][1000 genomes]
rs73711216	1.00[AFR][1000 genomes]
rs73711218	1.00[AFR][1000 genomes]
rs73711277	1.00[AFR][1000 genomes]
rs73711278	1.00[AFR][1000 genomes]
rs73711284	1.00[AFR][1000 genomes]
rs73711289	1.00[AFR][1000 genomes]
rs73713509	1.00[AMR][1000 genomes]
rs73713510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713516	1.00[AMR][1000 genomes]
rs73713518	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713519	1.00[AMR][1000 genomes]
rs73713520	1.00[AMR][1000 genomes]

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99132600-99148600	Weak transcription	Brain Angular Gyrus	brain
2	chr7:99138600-99148800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:99140000-99148600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:99141600-99148400	Weak transcription	Colonic Mucosa	Colon
5	chr7:99141600-99148600	Weak transcription	NHEK	skin
6	chr7:99142000-99148800	Weak transcription	Esophagus	oesophagus
7	chr7:99143600-99148600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:99143600-99148800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:99144200-99148600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:99144200-99149000	Weak transcription	Aorta	Aorta
11	chr7:99144400-99148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:99144400-99148800	Weak transcription	Small Intestine	intestine
13	chr7:99144600-99148600	Weak transcription	HUVEC	blood vessel
14	chr7:99144600-99148800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr7:99146000-99148400	Weak transcription	Brain Germinal Matrix	brain
16	chr7:99146000-99148400	Weak transcription	Spleen	Spleen
17	chr7:99146000-99148800	Weak transcription	Fetal Heart	heart
18	chr7:99146000-99148800	Weak transcription	NHDF-Ad	bronchial
19	chr7:99146200-99148400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:99146200-99148400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:99146200-99148400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:99146200-99148400	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:99146200-99148400	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:99146200-99148400	Weak transcription	Right Ventricle	heart
25	chr7:99146200-99148400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:99146200-99148400	Weak transcription	HSMM	muscle
27	chr7:99146200-99148400	Weak transcription	K562	blood
28	chr7:99146200-99148600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:99146200-99148600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:99146200-99148600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:99146200-99148600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:99146200-99148600	Weak transcription	Thymus	Thymus
33	chr7:99146200-99148600	Weak transcription	NH-A	brain
34	chr7:99146200-99148800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:99146200-99148800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr7:99146200-99148800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:99146200-99148800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:99146200-99148800	Weak transcription	Gastric	stomach
39	chr7:99146200-99148800	Weak transcription	Psoas Muscle	Psoas
40	chr7:99146200-99148800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:99146200-99148800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:99146200-99148800	Weak transcription	HMEC	breast
43	chr7:99146200-99148800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr7:99146400-99148400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:99146400-99148400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:99146400-99148400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:99146400-99148400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr7:99146400-99148400	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:99146400-99148400	Weak transcription	Placenta	Placenta
50	chr7:99146400-99148400	Weak transcription	Fetal Thymus	thymus

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