Variant report

Variant	rs73711210
Chromosome Location	chr7:98994800-98994801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98587958..98590431-chr7:98993222..98994998,2	K562	blood:
2	chr7:98970545..98974719-chr7:98992685..98998543,7	MCF-7	breast:
3	chr7:98972319..98974314-chr7:98993358..98995077,3	MCF-7	breast:
4	chr7:98966757..98974253-chr7:98988800..98995304,7	K562	blood:

Variant related genes	Relation type
ENSG00000130429	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55645332	1.00[AMR][1000 genomes]
rs55668841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55942015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55963144	1.00[AMR][1000 genomes]
rs56072000	1.00[AMR][1000 genomes]
rs56104955	1.00[AFR][1000 genomes]
rs56144997	1.00[AMR][1000 genomes]
rs56145748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56845845	1.00[AMR][1000 genomes]
rs56992635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57467259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57482580	1.00[AMR][1000 genomes]
rs58586429	1.00[AFR][1000 genomes]
rs59346440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60206309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60466806	1.00[AMR][1000 genomes]
rs61085247	1.00[AMR][1000 genomes]
rs61283116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709647	1.00[AMR][1000 genomes]
rs73709648	1.00[AMR][1000 genomes]
rs73710443	1.00[AMR][1000 genomes]
rs73710445	0.86[AFR][1000 genomes]
rs73710452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711289	1.00[AFR][1000 genomes]
rs73711292	1.00[AMR][1000 genomes]
rs73711299	1.00[AMR][1000 genomes]
rs73711300	1.00[AMR][1000 genomes]
rs73713503	1.00[AMR][1000 genomes]
rs73713504	1.00[AMR][1000 genomes]
rs73713510	1.00[AFR][1000 genomes]
rs73713518	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv971208	chr7:98992671-98997201	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98979400-99001800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:98980400-99003800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:98980800-99000600	Strong transcription	Dnd41	blood
4	chr7:98985600-99003800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:98987000-99004200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:98990000-99002800	Strong transcription	GM12878-XiMat	blood
7	chr7:98991000-98995000	Weak transcription	Aorta	Aorta
8	chr7:98991000-98996200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:98991000-99001600	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr7:98991000-99001600	Strong transcription	Osteobl	bone
11	chr7:98991000-99002000	Strong transcription	NHEK	skin
12	chr7:98991000-99002600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:98991000-99002600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:98991200-98996400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:98991200-98996600	Strong transcription	HSMM	muscle
16	chr7:98991400-98995400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:98991400-99001800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:98991400-99001800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:98991400-99001800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:98991400-99002400	Strong transcription	Esophagus	oesophagus
21	chr7:98991400-99002400	Weak transcription	Right Atrium	heart
22	chr7:98991400-99004200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:98991600-98995400	Strong transcription	NH-A	brain
24	chr7:98991600-98996200	Strong transcription	HMEC	breast
25	chr7:98991600-98996400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:98991600-98997200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:98991600-98999000	Strong transcription	Primary B cells from cord blood	blood
28	chr7:98991600-99001400	Strong transcription	Placenta	Placenta
29	chr7:98991600-99001600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:98991600-99001800	Strong transcription	NHLF	lung
31	chr7:98991600-99002000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:98991600-99002000	Strong transcription	Adipose Nuclei	Adipose
33	chr7:98991600-99002400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:98991600-99002800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:98991600-99003000	Strong transcription	Primary T cells from cord blood	blood
36	chr7:98991600-99003000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:98991600-99003400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:98991600-99003400	Weak transcription	Stomach Mucosa	stomach
39	chr7:98991600-99003400	Strong transcription	K562	blood
40	chr7:98991600-99005200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr7:98991800-98994800	Weak transcription	Small Intestine	intestine
42	chr7:98991800-98995000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:98991800-98995200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
44	chr7:98991800-98995400	Strong transcription	HUVEC	blood vessel
45	chr7:98991800-98995800	Weak transcription	Fetal Kidney	kidney
46	chr7:98991800-98996400	Strong transcription	Lung	lung
47	chr7:98991800-98999000	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr7:98991800-99001400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:98991800-99001400	Strong transcription	Spleen	Spleen
50	chr7:98991800-99001800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links