Variant report

Variant	rs73713504
Chromosome Location	chr7:99131581-99131582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99129008..99131718-chr7:99137131..99141580,3	K562	blood:
2	chr7:99128997..99131650-chr7:99148283..99150695,2	MCF-7	breast:
3	chr7:99128290..99131980-chr7:99159807..99163198,3	K562	blood:
4	chr7:99131004..99133205-chr7:99216601..99219194,3	K562	blood:
5	chr7:99129430..99132256-chr7:99148288..99150632,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction
ENSG00000221909	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12721625	1.00[AMR][1000 genomes]
rs55645332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55668841	1.00[AMR][1000 genomes]
rs55942015	1.00[AMR][1000 genomes]
rs55963144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56072000	1.00[AMR][1000 genomes]
rs56144997	1.00[AMR][1000 genomes]
rs56145748	1.00[AMR][1000 genomes]
rs56845845	1.00[AMR][1000 genomes]
rs56992635	1.00[AMR][1000 genomes]
rs57467259	1.00[AMR][1000 genomes]
rs57482580	1.00[AMR][1000 genomes]
rs58352093	0.86[AFR][1000 genomes]
rs59346440	1.00[AMR][1000 genomes]
rs60206309	1.00[AMR][1000 genomes]
rs60466806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61085247	1.00[AMR][1000 genomes]
rs61283116	1.00[AMR][1000 genomes]
rs73709647	1.00[AMR][1000 genomes]
rs73709648	1.00[AMR][1000 genomes]
rs73710443	1.00[AMR][1000 genomes]
rs73710452	1.00[AMR][1000 genomes]
rs73710453	1.00[AMR][1000 genomes]
rs73711210	1.00[AMR][1000 genomes]
rs73711213	1.00[AMR][1000 genomes]
rs73711216	1.00[AMR][1000 genomes]
rs73711218	1.00[AMR][1000 genomes]
rs73711277	1.00[AMR][1000 genomes]
rs73711278	1.00[AMR][1000 genomes]
rs73711284	1.00[AMR][1000 genomes]
rs73711292	1.00[AMR][1000 genomes]
rs73711299	1.00[AMR][1000 genomes]
rs73711300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713509	1.00[AFR][1000 genomes]
rs73713516	1.00[AFR][1000 genomes]
rs73713518	0.86[AFR][1000 genomes]
rs73713519	1.00[AFR][1000 genomes]
rs73713520	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv819741	chr7:99130848-99131615	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99122400-99132800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:99125200-99131800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr7:99125400-99131800	ZNF genes & repeats	Liver	Liver
4	chr7:99125600-99131800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:99125600-99131800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr7:99125800-99131600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
7	chr7:99125800-99131800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:99125800-99131800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:99125800-99131800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr7:99125800-99131800	ZNF genes & repeats	Fetal Lung	lung
11	chr7:99125800-99131800	ZNF genes & repeats	Fetal Muscle Leg	muscle
12	chr7:99125800-99132000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:99125800-99132000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:99125800-99132000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
15	chr7:99125800-99133000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:99126000-99131600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:99126000-99131600	ZNF genes & repeats	Ovary	ovary
18	chr7:99126000-99131600	ZNF genes & repeats	Thymus	Thymus
19	chr7:99126000-99131800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr7:99126000-99131800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:99126000-99131800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr7:99126000-99131800	ZNF genes & repeats	Placenta	Placenta
23	chr7:99126000-99132000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:99126000-99132000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr7:99126000-99132000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr7:99126000-99132600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:99126000-99132800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:99126000-99132800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:99126000-99133200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:99126000-99133800	ZNF genes & repeats	Fetal Stomach	stomach
31	chr7:99126200-99131800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:99126400-99131800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:99126400-99131800	ZNF genes & repeats	A549	lung
34	chr7:99127000-99131600	ZNF genes & repeats	Fetal Brain Male	brain
35	chr7:99127400-99131600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr7:99127400-99131600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
37	chr7:99127800-99131800	ZNF genes & repeats	Fetal Brain Female	brain
38	chr7:99128000-99131600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:99128000-99131600	ZNF genes & repeats	HSMMtube	muscle
40	chr7:99128000-99131800	ZNF genes & repeats	NHDF-Ad	bronchial
41	chr7:99128000-99132600	ZNF genes & repeats	HSMM	muscle
42	chr7:99128200-99131600	ZNF genes & repeats	K562	blood
43	chr7:99128200-99131800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
44	chr7:99128200-99131800	ZNF genes & repeats	NH-A	brain
45	chr7:99128200-99132000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
46	chr7:99128400-99131600	ZNF genes & repeats	Left Ventricle	heart
47	chr7:99128600-99131600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr7:99128600-99131600	ZNF genes & repeats	Brain Substantia Nigra	brain
49	chr7:99128800-99131600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:99128800-99131800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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