Variant report

Variant	rs73711292
Chromosome Location	chr7:99070770-99070771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:99070181-99071179	Hela-S3	cervix:	n/a	chr7:99070938-99070947 chr7:99070326-99070335 chr7:99070326-99070335 chr7:99070325-99070336
2	MYBL2	chr7:99069988-99071197	HepG2	liver:	n/a	n/a
3	SIN3AK20	chr7:99070165-99071078	PANC-1	pancreas:	n/a	n/a
4	YY1	chr7:99070748-99071231	GM12878	blood:	n/a	n/a
5	MAX	chr7:99070156-99070796	ECC-1	luminal epithelium:	n/a	chr7:99070326-99070335 chr7:99070326-99070335 chr7:99070325-99070336
6	POLR2A	chr7:99070080-99071291	H1-neurons	neurons:	n/a	n/a
7	ZBTB7A	chr7:99070290-99070966	K562	blood:	n/a	n/a
8	POLR2A	chr7:99069928-99071829	GM12878	blood:	n/a	n/a
9	POLR2A	chr7:99070237-99071039	HepG2	liver:	n/a	n/a
10	POLR2A	chr7:99070059-99071192	GM12878	blood:	n/a	n/a
11	RELA	chr7:99070199-99071171	GM18951	blood:	n/a	n/a
12	TAF1	chr7:99070047-99071112	ECC-1	luminal epithelium:	n/a	n/a
13	MAX	chr7:99070154-99071129	GM12878	blood:	n/a	chr7:99070938-99070947 chr7:99070326-99070335 chr7:99070326-99070335 chr7:99070325-99070336
14	TAF7	chr7:99070102-99070801	H1-hESC	embryonic stem cell:	n/a	n/a
15	TAF1	chr7:99070076-99071036	ECC-1	luminal epithelium:	n/a	n/a
16	USF1	chr7:99070048-99071275	SK-N-SH	brain:	n/a	chr7:99070324-99070337 chr7:99070325-99070336 chr7:99070327-99070336 chr7:99070320-99070341 chr7:99070326-99070335 chr7:99070326-99070335
17	POLR2A	chr7:99070170-99070813	GM12878	blood:	n/a	n/a
18	HCFC1	chr7:99070195-99071213	K562	blood:	n/a	n/a
19	SIN3AK20	chr7:99070026-99071330	MCF-7	breast:	n/a	n/a
20	SPI1	chr7:99070681-99071553	GM12878	blood:	n/a	n/a
21	POLR2A	chr7:99070037-99071223	K562	blood:	n/a	n/a
22	USF2	chr7:99070126-99071074	H1-hESC	embryonic stem cell:	n/a	chr7:99070325-99070336 chr7:99070324-99070337 chr7:99070936-99070947 chr7:99070327-99070336 chr7:99070320-99070341 chr7:99070326-99070335 chr7:99070326-99070335
23	TAF1	chr7:99070091-99070894	H1-neurons	neurons:	n/a	n/a
24	HEY1	chr7:99069956-99070844	HepG2	liver:	n/a	chr7:99070490-99070505
25	MAX	chr7:99070106-99071434	K562	blood:	n/a	chr7:99070938-99070947 chr7:99070326-99070335 chr7:99070326-99070335 chr7:99070325-99070336
26	USF1	chr7:99069920-99071206	HCT-116	colon:	n/a	chr7:99070324-99070337 chr7:99070325-99070336 chr7:99070327-99070336 chr7:99070320-99070341 chr7:99070326-99070335 chr7:99070326-99070335
27	HEY1	chr7:99070040-99071317	K562	blood:	n/a	chr7:99070490-99070505
28	TCF3	chr7:99070325-99070785	GM12878	blood:	n/a	n/a
29	MYC	chr7:99070104-99071333	K562	blood:	n/a	chr7:99070938-99070947 chr7:99070326-99070335 chr7:99070326-99070335 chr7:99070325-99070336
30	POLR2A	chr7:99068954-99071211	MCF10A-Er-Src	breast:	n/a	n/a
31	NFYA	chr7:99070102-99071312	K562	blood:	n/a	chr7:99070385-99070400 chr7:99070352-99070370 chr7:99070357-99070371 chr7:99070385-99070400 chr7:99070381-99070399 chr7:99070389-99070401
32	POLR2A	chr7:99069940-99071254	PBDE	blood:	n/a	n/a
33	POLR2A	chr7:99070050-99071099	H1-neurons	neurons:	n/a	n/a
34	ZBTB7A	chr7:99070403-99070820	K562	blood:	n/a	n/a
35	REST	chr7:99070723-99070976	A549	lung:	n/a	n/a
36	GABPA	chr7:99070151-99070956	MCF-7	breast:	n/a	n/a
37	CBX3	chr7:99070761-99071419	K562	blood:	n/a	chr7:99070973-99070984
38	TBP	chr7:99070041-99071124	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr7:99070068-99070805	GM18951	blood:	n/a	n/a
40	BCL3	chr7:99070189-99071289	A549	lung:	n/a	n/a
41	MAX	chr7:99070140-99071325	NB4	blood:	n/a	chr7:99070938-99070947 chr7:99070326-99070335 chr7:99070326-99070335 chr7:99070325-99070336
42	USF1	chr7:99070083-99071303	K562	blood:	n/a	chr7:99070324-99070337 chr7:99070325-99070336 chr7:99070327-99070336 chr7:99070320-99070341 chr7:99070326-99070335 chr7:99070326-99070335
43	SP2	chr7:99070033-99071117	HepG2	liver:	n/a	n/a
44	TEAD4	chr7:99069877-99071448	K562	blood:	n/a	n/a
45	BCLAF1	chr7:99070106-99071114	GM12878	blood:	n/a	n/a
46	TCF12	chr7:99070099-99070904	ECC-1	luminal epithelium:	n/a	chr7:99070467-99070477
47	POLR2A	chr7:99070098-99071205	HUVEC	blood vessel:	n/a	n/a
48	NRF1	chr7:99070121-99071324	SK-N-SH	brain:	n/a	chr7:99070497-99070508
49	USF1	chr7:99070033-99071346	HCT-116	colon:	n/a	chr7:99070324-99070337 chr7:99070325-99070336 chr7:99070327-99070336 chr7:99070320-99070341 chr7:99070326-99070335 chr7:99070326-99070335
50	YY1	chr7:99070179-99070838	SK-N-SH_RA	brain:	n/a	chr7:99070372-99070386

No.	Distal block	Cell Line	Cell type
1	chr7:99068908..99072651-chr7:99154750..99158224,8	K562	blood:
2	chr7:99004812..99006640-chr7:99069621..99072318,3	K562	blood:
3	chr7:99068815..99072356-chr7:99100086..99103806,3	MCF-7	breast:
4	chr7:99062287..99065237-chr7:99068917..99072408,9	MCF-7	breast:
5	chr7:99034517..99037333-chr7:99070217..99072293,2	K562	blood:
6	chr7:99068023..99071798-chr7:99154715..99160193,6	K562	blood:
7	chr7:99070549..99074806-chr7:99079713..99086160,8	K562	blood:
8	chr7:99070395..99072664-chr7:99081646..99084913,3	MCF-7	breast:
9	chr7:99068972..99072429-chr7:99096212..99099578,8	K562	blood:
10	chr7:99005061..99007834-chr7:99068897..99070903,2	MCF-7	breast:
11	chr7:99069496..99072667-chr7:99072993..99076843,7	MCF-7	breast:
12	chr7:99068981..99071062-chr7:99097766..99099600,3	MCF-7	breast:
13	chr7:99069267..99072037-chr7:99212964..99216446,4	MCF-7	breast:
14	chr7:99068944..99071143-chr7:99214242..99216094,2	K562	blood:
15	chr7:99069369..99071006-chr7:99097594..99099099,2	MCF-7	breast:
16	chr7:99069546..99072504-chr7:99101462..99103609,2	MCF-7	breast:

Variant related genes	Relation type
ZNF789	TF binding region
ENSG00000197343	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000272647	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55645332	1.00[AMR][1000 genomes]
rs55668841	1.00[AMR][1000 genomes]
rs55942015	1.00[AMR][1000 genomes]
rs55963144	1.00[AMR][1000 genomes]
rs56072000	1.00[AMR][1000 genomes]
rs56144997	1.00[AMR][1000 genomes]
rs56145748	1.00[AMR][1000 genomes]
rs56845845	1.00[AMR][1000 genomes]
rs56992635	1.00[AMR][1000 genomes]
rs57467259	1.00[AMR][1000 genomes]
rs57482580	1.00[AMR][1000 genomes]
rs59346440	1.00[AMR][1000 genomes]
rs60206309	1.00[AMR][1000 genomes]
rs60466806	1.00[AMR][1000 genomes]
rs61085247	1.00[AMR][1000 genomes]
rs61283116	1.00[AMR][1000 genomes]
rs73709647	1.00[AMR][1000 genomes]
rs73709648	1.00[AMR][1000 genomes]
rs73710443	1.00[AMR][1000 genomes]
rs73710452	1.00[AMR][1000 genomes]
rs73710453	1.00[AMR][1000 genomes]
rs73711210	1.00[AMR][1000 genomes]
rs73711213	1.00[AMR][1000 genomes]
rs73711216	1.00[AMR][1000 genomes]
rs73711218	1.00[AMR][1000 genomes]
rs73711277	1.00[AMR][1000 genomes]
rs73711278	1.00[AMR][1000 genomes]
rs73711284	1.00[AMR][1000 genomes]
rs73711299	1.00[AMR][1000 genomes]
rs73711300	1.00[AMR][1000 genomes]
rs73713503	1.00[AMR][1000 genomes]
rs73713504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99066800-99071600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:99066800-99071800	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:99067600-99070800	Active TSS	HepG2	liver
4	chr7:99067600-99071400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr7:99068800-99070800	Active TSS	Liver	Liver
6	chr7:99068800-99070800	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr7:99068800-99071000	Active TSS	Hela-S3	cervix
8	chr7:99068800-99071200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:99068800-99071600	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr7:99068800-99071600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:99068800-99072000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:99069000-99070800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:99069000-99070800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:99069000-99070800	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr7:99069000-99071000	Active TSS	Primary T cells from cord blood	blood
16	chr7:99069000-99071000	Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr7:99069000-99071000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:99069000-99071000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:99069000-99071000	Active TSS	Brain Anterior Caudate	brain
20	chr7:99069000-99071000	Active TSS	Brain Hippocampus Middle	brain
21	chr7:99069000-99071000	Active TSS	Colon Smooth Muscle	Colon
22	chr7:99069000-99071000	Active TSS	Duodenum Mucosa	Duodenum
23	chr7:99069000-99071000	Active TSS	Fetal Brain Male	brain
24	chr7:99069000-99071000	Active TSS	Fetal Lung	lung
25	chr7:99069000-99071000	Active TSS	Ovary	ovary
26	chr7:99069000-99071000	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr7:99069000-99071000	Active TSS	Rectal Smooth Muscle	rectum
28	chr7:99069000-99071000	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr7:99069000-99071000	Active TSS	Thymus	Thymus
30	chr7:99069000-99071200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:99069000-99071200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:99069000-99071200	Active TSS	K562	blood
33	chr7:99069000-99071600	Active TSS	H9 Cell Line	embryonic stem cell
34	chr7:99069000-99071600	Active TSS	A549	lung
35	chr7:99069000-99071800	Active TSS	H1 Cell Line	embryonic stem cell
36	chr7:99069000-99071800	Active TSS	Fetal Kidney	kidney
37	chr7:99069200-99070800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr7:99069200-99070800	Active TSS	Adipose Nuclei	Adipose
39	chr7:99069200-99071000	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr7:99069200-99071000	Active TSS	Primary monocytes fromperipheralblood	blood
41	chr7:99069200-99071000	Active TSS	Primary B cells from peripheral blood	blood
42	chr7:99069200-99071000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr7:99069200-99071000	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr7:99069200-99071000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:99069200-99071000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr7:99069200-99071000	Active TSS	Fetal Muscle Leg	muscle
47	chr7:99069200-99071000	Active TSS	Fetal Stomach	stomach
48	chr7:99069200-99071000	Active TSS	Dnd41	blood
49	chr7:99069200-99071000	Active TSS	Osteobl	bone
50	chr7:99069200-99071200	Active TSS	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links