Variant report

Variant	rs73711299
Chromosome Location	chr7:99103227-99103228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99102673..99104536-chr7:99527023..99529277,2	K562	blood:
2	chr7:99038361..99041126-chr7:99102588..99104976,2	K562	blood:
3	chr7:99100982..99104119-chr7:99213088..99215201,3	K562	blood:
4	chr7:99102360..99104532-chr7:99213468..99216183,2	MCF-7	breast:
5	chr7:99101000..99104995-chr7:99153806..99158171,7	K562	blood:
6	chr7:99089753..99092320-chr7:99103072..99105553,2	K562	blood:
7	chr7:99055033..99067556-chr7:99095016..99105645,21	K562	blood:
8	chr7:99101316..99104105-chr7:99146810..99149778,3	MCF-7	breast:
9	chr7:99096043..99099398-chr7:99100534..99104285,13	MCF-7	breast:
10	chr7:99069546..99072504-chr7:99101462..99103609,2	MCF-7	breast:
11	chr7:99005276..99007163-chr7:99100557..99104017,3	K562	blood:
12	chr7:99068815..99072356-chr7:99100086..99103806,3	MCF-7	breast:
13	chr7:99101340..99103722-chr7:99148139..99149970,3	K562	blood:
14	chr7:99101331..99104822-chr7:99153806..99158131,11	K562	blood:
15	chr7:99101618..99103832-chr7:99727282..99728826,2	K562	blood:
16	chr1:155107680..155108415-chr7:99102514..99103388,2	Hela-S3	cervix:
17	chr7:99035600..99037470-chr7:99101229..99103802,2	K562	blood:
18	chr7:99102991..99104642-chr7:99150444..99152171,2	K562	blood:
19	chr7:99102097..99103970-chr7:99147746..99149891,2	MCF-7	breast:
20	chr7:99102891..99105276-chr7:99159127..99161100,2	K562	blood:
21	chr7:99102652..99106097-chr7:99213057..99215994,4	K562	blood:
22	chr7:99050772..99052911-chr7:99101324..99104173,2	K562	blood:
23	chr7:99062251..99065366-chr7:99100921..99104362,4	MCF-7	breast:
24	chr7:99062282..99063948-chr7:99101006..99103756,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106245	Chromatin interaction
ENSG00000197343	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction
ENSG00000160908	Chromatin interaction
ENSG00000228335	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000235077	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000214314	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000169241	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000176402	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55645332	1.00[AMR][1000 genomes]
rs55668841	1.00[AMR][1000 genomes]
rs55942015	1.00[AMR][1000 genomes]
rs55963144	1.00[AMR][1000 genomes]
rs56072000	1.00[AMR][1000 genomes]
rs56144997	1.00[AMR][1000 genomes]
rs56145748	1.00[AMR][1000 genomes]
rs56845845	1.00[AMR][1000 genomes]
rs56992635	1.00[AMR][1000 genomes]
rs57467259	1.00[AMR][1000 genomes]
rs57482580	1.00[AMR][1000 genomes]
rs59346440	1.00[AMR][1000 genomes]
rs60206309	1.00[AMR][1000 genomes]
rs60466806	1.00[AMR][1000 genomes]
rs61085247	1.00[AMR][1000 genomes]
rs61283116	1.00[AMR][1000 genomes]
rs73709647	1.00[AMR][1000 genomes]
rs73709648	1.00[AMR][1000 genomes]
rs73710443	1.00[AMR][1000 genomes]
rs73710452	1.00[AMR][1000 genomes]
rs73710453	1.00[AMR][1000 genomes]
rs73711210	1.00[AMR][1000 genomes]
rs73711213	1.00[AMR][1000 genomes]
rs73711216	1.00[AMR][1000 genomes]
rs73711218	1.00[AMR][1000 genomes]
rs73711277	1.00[AMR][1000 genomes]
rs73711278	1.00[AMR][1000 genomes]
rs73711284	1.00[AMR][1000 genomes]
rs73711292	1.00[AMR][1000 genomes]
rs73711300	1.00[AMR][1000 genomes]
rs73713503	1.00[AMR][1000 genomes]
rs73713504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99101400-99103800	Active TSS	Thymus	Thymus
2	chr7:99101600-99103400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:99101600-99103400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:99101600-99103400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:99101600-99103600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:99101800-99103400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:99101800-99103400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:99101800-99103400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:99101800-99103400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:99101800-99103400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:99101800-99103400	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr7:99101800-99103400	Active TSS	Primary hematopoietic stem cells	blood
13	chr7:99101800-99103400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:99101800-99103400	Active TSS	Esophagus	oesophagus
15	chr7:99101800-99103400	Active TSS	Fetal Kidney	kidney
16	chr7:99101800-99103400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr7:99101800-99103400	Active TSS	Lung	lung
18	chr7:99101800-99103400	Active TSS	Stomach Mucosa	stomach
19	chr7:99101800-99103400	Active TSS	A549	lung
20	chr7:99101800-99103400	Bivalent/Poised TSS	HepG2	liver
21	chr7:99101800-99103400	Active TSS	HSMM	muscle
22	chr7:99101800-99103400	Active TSS	HSMMtube	muscle
23	chr7:99101800-99103400	Active TSS	NHDF-Ad	bronchial
24	chr7:99101800-99103600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:99101800-99103600	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr7:99101800-99103600	Active TSS	Fetal Intestine Large	intestine
27	chr7:99101800-99103600	Active TSS	Gastric	stomach
28	chr7:99101800-99103600	Active TSS	Ovary	ovary
29	chr7:99101800-99103600	Active TSS	Right Ventricle	heart
30	chr7:99101800-99103600	Active TSS	HMEC	breast
31	chr7:99101800-99103600	Active TSS	NHLF	lung
32	chr7:99101800-99103800	Active TSS	H1 Cell Line	embryonic stem cell
33	chr7:99101800-99104200	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr7:99101800-99104200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:99101800-99104600	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr7:99101800-99104600	Active TSS	K562	blood
37	chr7:99101800-99105000	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr7:99101800-99105000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr7:99101800-99105000	Active TSS	H9 Cell Line	embryonic stem cell
40	chr7:99101800-99105000	Active TSS	HUES48 Cell Line	embryonic stem cell
41	chr7:99101800-99105400	Active TSS	HUES6 Cell Line	embryonic stem cell
42	chr7:99102000-99103400	Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr7:99102000-99103400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:99102000-99103400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:99102000-99103400	Active TSS	Pancreas	Pancrea
46	chr7:99102000-99103400	Active TSS	Small Intestine	intestine
47	chr7:99102000-99103600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr7:99102000-99103600	Active TSS	Aorta	Aorta
49	chr7:99102000-99103600	Active TSS	Placenta	Placenta
50	chr7:99102000-99103600	Active TSS	Left Ventricle	heart

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