Variant report

Variant	rs56144997
Chromosome Location	chr7:98962763-98962764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98960796..98963310-chr7:98983560..98985753,2	MCF-7	breast:
2	chr7:98959822..98968172-chr7:98968902..98974586,14	MCF-7	breast:
3	chr7:98962190..98963996-chr7:98991178..98993246,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130429	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs45506694	1.00[EUR][1000 genomes]
rs45599433	1.00[EUR][1000 genomes]
rs55645332	1.00[AMR][1000 genomes]
rs55668841	1.00[AMR][1000 genomes]
rs55942015	1.00[AMR][1000 genomes]
rs55963144	1.00[AMR][1000 genomes]
rs56043713	1.00[EUR][1000 genomes]
rs56072000	1.00[AMR][1000 genomes]
rs56145748	1.00[AMR][1000 genomes]
rs56845845	1.00[AMR][1000 genomes]
rs56992635	1.00[AMR][1000 genomes]
rs57467259	1.00[AMR][1000 genomes]
rs57482580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58814835	1.00[EUR][1000 genomes]
rs59346440	1.00[AMR][1000 genomes]
rs60206309	1.00[AMR][1000 genomes]
rs60466806	1.00[AMR][1000 genomes]
rs61085247	1.00[AMR][1000 genomes]
rs61283116	1.00[AMR][1000 genomes]
rs61745713	1.00[EUR][1000 genomes]
rs61745729	1.00[EUR][1000 genomes]
rs73709647	1.00[AMR][1000 genomes]
rs73709648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710441	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73710443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73710444	1.00[EUR][1000 genomes]
rs73710452	1.00[AMR][1000 genomes]
rs73710453	1.00[AMR][1000 genomes]
rs73711210	1.00[AMR][1000 genomes]
rs73711213	1.00[AMR][1000 genomes]
rs73711216	1.00[AMR][1000 genomes]
rs73711218	1.00[AMR][1000 genomes]
rs73711277	1.00[AMR][1000 genomes]
rs73711278	1.00[AMR][1000 genomes]
rs73711284	1.00[AMR][1000 genomes]
rs73711292	1.00[AMR][1000 genomes]
rs73711299	1.00[AMR][1000 genomes]
rs73711300	1.00[AMR][1000 genomes]
rs73713503	1.00[AMR][1000 genomes]
rs73713504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98925200-98965200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:98927200-98966800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:98928400-98967200	Strong transcription	Fetal Thymus	thymus
5	chr7:98928600-98965200	Strong transcription	Dnd41	blood
6	chr7:98929000-98965600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:98929400-98965200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:98929600-98962800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr7:98929600-98965400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:98929800-98965000	Strong transcription	Duodenum Mucosa	Duodenum
11	chr7:98930000-98962800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:98930000-98968200	Strong transcription	Fetal Intestine Small	intestine
13	chr7:98930200-98968400	Strong transcription	Fetal Stomach	stomach
14	chr7:98930600-98965200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:98930600-98965200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:98930600-98965200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:98930800-98965200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:98930800-98965200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:98930800-98965400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:98930800-98966800	Strong transcription	Adipose Nuclei	Adipose
21	chr7:98930800-98967000	Strong transcription	Fetal Muscle Leg	muscle
22	chr7:98930800-98967600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr7:98931000-98965000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:98932600-98966400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:98934400-98965200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr7:98935600-98971600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:98939600-98965400	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:98939800-98965200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:98939800-98965200	Strong transcription	Fetal Intestine Large	intestine
30	chr7:98940200-98965000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:98940600-98965000	Strong transcription	Primary T cells from cord blood	blood
32	chr7:98941200-98963000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:98941600-98965200	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr7:98944200-98967200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr7:98944400-98965200	Strong transcription	Thymus	Thymus
36	chr7:98944400-98965400	Strong transcription	Spleen	Spleen
37	chr7:98944600-98965200	Strong transcription	Lung	lung
38	chr7:98945600-98963200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:98945600-98963200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr7:98946400-98967600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr7:98951000-98965000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr7:98951000-98967000	Strong transcription	Left Ventricle	heart
43	chr7:98951200-98965200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr7:98951200-98965200	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:98951200-98965200	Strong transcription	Right Ventricle	heart
46	chr7:98951200-98965200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:98951200-98965200	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:98951400-98963400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:98951400-98965200	Strong transcription	Fetal Brain Female	brain
50	chr7:98952800-98963000	Strong transcription	H1 Cell Line	embryonic stem cell

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