Variant report

Variant	rs73710444
Chromosome Location	chr7:98965075-98965076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98964264..98966254-chr7:98968520..98970392,2	K562	blood:
2	chr7:98963718..98966584-chr7:99003795..99005637,2	MCF-7	breast:
3	chr7:98964521..98966549-chr7:98972530..98974086,2	K562	blood:
4	chr7:98963291..98965868-chr7:99006245..99008674,2	MCF-7	breast:
5	chr7:98888221..98890388-chr7:98963872..98966466,2	K562	blood:
6	chr7:98959822..98968172-chr7:98968902..98974586,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130429	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000106245	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs45506694	1.00[EUR][1000 genomes]
rs45599433	1.00[EUR][1000 genomes]
rs56043713	1.00[EUR][1000 genomes]
rs56144997	1.00[EUR][1000 genomes]
rs57482580	1.00[EUR][1000 genomes]
rs58814835	1.00[EUR][1000 genomes]
rs61745713	1.00[EUR][1000 genomes]
rs61745729	1.00[EUR][1000 genomes]
rs73710441	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98924600-98971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:98925200-98965200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:98927200-98966800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:98928400-98967200	Strong transcription	Fetal Thymus	thymus
5	chr7:98928600-98965200	Strong transcription	Dnd41	blood
6	chr7:98929000-98965600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:98929400-98965200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:98929600-98965400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:98930000-98968200	Strong transcription	Fetal Intestine Small	intestine
10	chr7:98930200-98968400	Strong transcription	Fetal Stomach	stomach
11	chr7:98930600-98965200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:98930600-98965200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:98930600-98965200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:98930800-98965200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr7:98930800-98965200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:98930800-98965400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr7:98930800-98966800	Strong transcription	Adipose Nuclei	Adipose
18	chr7:98930800-98967000	Strong transcription	Fetal Muscle Leg	muscle
19	chr7:98930800-98967600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr7:98932600-98966400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:98934400-98965200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr7:98935600-98971600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:98939600-98965400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:98939800-98965200	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr7:98939800-98965200	Strong transcription	Fetal Intestine Large	intestine
26	chr7:98941600-98965200	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:98944200-98967200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:98944400-98965200	Strong transcription	Thymus	Thymus
29	chr7:98944400-98965400	Strong transcription	Spleen	Spleen
30	chr7:98944600-98965200	Strong transcription	Lung	lung
31	chr7:98946400-98967600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr7:98951000-98967000	Strong transcription	Left Ventricle	heart
33	chr7:98951200-98965200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr7:98951200-98965200	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:98951200-98965200	Strong transcription	Right Ventricle	heart
36	chr7:98951200-98965200	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:98951200-98965200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:98951400-98965200	Strong transcription	Fetal Brain Female	brain
39	chr7:98953400-98967200	Strong transcription	Rectal Smooth Muscle	rectum
40	chr7:98953800-98971600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr7:98954400-98965200	Strong transcription	Liver	Liver
42	chr7:98954600-98965200	Strong transcription	HSMM	muscle
43	chr7:98954800-98965200	Strong transcription	Ovary	ovary
44	chr7:98955000-98971600	Weak transcription	Right Atrium	heart
45	chr7:98955600-98970200	Weak transcription	Fetal Brain Male	brain
46	chr7:98956000-98966800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:98956200-98970400	Weak transcription	Stomach Mucosa	stomach
48	chr7:98956600-98967200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr7:98956800-98965200	Strong transcription	Brain Anterior Caudate	brain
50	chr7:98957000-98965200	Strong transcription	Brain Angular Gyrus	brain

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