Variant report

Variant	rs55963144
Chromosome Location	chr7:99096681-99096682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr7:99095827-99096756	HEK293-T-REx	kidney:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99096612..99098660-chr7:99212869..99215579,2	K562	blood:
2	chr7:99096043..99099398-chr7:99100534..99104285,13	MCF-7	breast:
3	chr7:99096392..99100138-chr7:99212020..99214742,4	MCF-7	breast:
4	chr7:99055033..99067556-chr7:99095016..99105645,21	K562	blood:
5	chr7:99034906..99037926-chr7:99095119..99098935,4	K562	blood:
6	chr7:99068844..99070718-chr7:99094622..99097601,3	MCF-7	breast:
7	chr7:99035327..99038027-chr7:99096331..99099819,5	MCF-7	breast:
8	chr7:99063380..99066123-chr7:99095103..99099037,3	MCF-7	breast:
9	chr7:99061566..99064955-chr7:99096123..99100968,5	MCF-7	breast:
10	chr7:99095910..99098991-chr7:99677831..99680952,3	K562	blood:
11	chr7:99004301..99006264-chr7:99095120..99098080,2	MCF-7	breast:
12	chr7:99094587..99100534-chr7:99152995..99157420,10	K562	blood:
13	chr7:99096384..99098728-chr7:99154731..99157565,2	MCF-7	breast:
14	chr7:99094587..99099514-chr7:99154661..99157582,5	K562	blood:
15	chr7:99068972..99072429-chr7:99096212..99099578,8	K562	blood:

No data

Variant related genes	Relation type
ZNF394	TF binding region
ENSG00000106244	Chromatin interaction
ENSG00000272647	Chromatin interaction
ENSG00000166526	Chromatin interaction
ENSG00000197343	Chromatin interaction
ENSG00000197037	Chromatin interaction
ENSG00000241468	Chromatin interaction
ENSG00000221909	Chromatin interaction
ENSG00000196652	Chromatin interaction
ENSG00000198556	Chromatin interaction
ENSG00000248919	Chromatin interaction
ENSG00000106246	Chromatin interaction
ENSG00000160917	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55645332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55668841	1.00[AMR][1000 genomes]
rs55942015	1.00[AMR][1000 genomes]
rs56072000	1.00[AMR][1000 genomes]
rs56144997	1.00[AMR][1000 genomes]
rs56145748	1.00[AMR][1000 genomes]
rs56845845	1.00[AMR][1000 genomes]
rs56992635	1.00[AMR][1000 genomes]
rs57467259	1.00[AMR][1000 genomes]
rs57482580	1.00[AMR][1000 genomes]
rs59346440	1.00[AMR][1000 genomes]
rs60206309	1.00[AMR][1000 genomes]
rs60466806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61085247	1.00[AMR][1000 genomes]
rs61283116	1.00[AMR][1000 genomes]
rs73709647	1.00[AMR][1000 genomes]
rs73709648	1.00[AMR][1000 genomes]
rs73710443	1.00[AMR][1000 genomes]
rs73710452	1.00[AMR][1000 genomes]
rs73710453	1.00[AMR][1000 genomes]
rs73711210	1.00[AMR][1000 genomes]
rs73711213	1.00[AMR][1000 genomes]
rs73711216	1.00[AMR][1000 genomes]
rs73711218	1.00[AMR][1000 genomes]
rs73711277	1.00[AMR][1000 genomes]
rs73711278	1.00[AMR][1000 genomes]
rs73711284	1.00[AMR][1000 genomes]
rs73711292	1.00[AMR][1000 genomes]
rs73711299	1.00[AMR][1000 genomes]
rs73711300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73713509	1.00[AFR][1000 genomes]
rs73713516	1.00[AFR][1000 genomes]
rs73713518	0.86[AFR][1000 genomes]
rs73713519	1.00[AFR][1000 genomes]
rs73713520	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99095000-99097600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr7:99095000-99098400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:99095200-99096800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
4	chr7:99095200-99096800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:99095400-99096800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:99095400-99098200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
7	chr7:99095400-99098800	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr7:99095600-99096800	Transcr. at gene 5' and 3'	Brain Cingulate Gyrus	brain
9	chr7:99095600-99096800	Flanking Active TSS	Brain Germinal Matrix	brain
10	chr7:99095600-99096800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
11	chr7:99095600-99098800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:99095800-99096800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr7:99095800-99096800	Flanking Active TSS	Fetal Brain Female	brain
14	chr7:99095800-99097200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:99096000-99096800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
16	chr7:99096000-99096800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr7:99096000-99096800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr7:99096000-99096800	Flanking Active TSS	Osteobl	bone
19	chr7:99096000-99097200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr7:99096000-99098800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr7:99096200-99096800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:99096200-99096800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:99096200-99096800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr7:99096200-99096800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr7:99096200-99096800	Flanking Active TSS	Fetal Lung	lung
26	chr7:99096200-99096800	Flanking Active TSS	Placenta	Placenta
27	chr7:99096200-99098200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr7:99096200-99098200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:99096200-99098400	Active TSS	Fetal Intestine Large	intestine
30	chr7:99096200-99098400	Active TSS	Small Intestine	intestine
31	chr7:99096200-99098600	Active TSS	Fetal Kidney	kidney
32	chr7:99096200-99098600	Active TSS	GM12878-XiMat	blood
33	chr7:99096200-99098800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:99096200-99098800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr7:99096200-99098800	Bivalent/Poised TSS	HepG2	liver
36	chr7:99096400-99096800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:99096400-99096800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr7:99096400-99096800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr7:99096400-99096800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:99096400-99096800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr7:99096400-99096800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:99096400-99096800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr7:99096400-99096800	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr7:99096400-99096800	Flanking Active TSS	Liver	Liver
45	chr7:99096400-99096800	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr7:99096400-99096800	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr7:99096400-99097000	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr7:99096400-99098400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:99096400-99098600	Active TSS	Esophagus	oesophagus
50	chr7:99096400-99098800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links