Variant report

Variant	rs56105977
Chromosome Location	chr6:30833581-30833582
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30831759..30834658-chr6:30842152..30844825,3	K562	blood:
2	chr6:30823525..30825673-chr6:30833056..30834672,2	K562	blood:
3	chr6:30580172..30583109-chr6:30833542..30835483,2	K562	blood:

Variant related genes	Relation type
ENSG00000204580	Chromatin interaction
ENSG00000237775	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1264361	1.00[ASN][1000 genomes]
rs3095334	1.00[ASN][1000 genomes]
rs3129978	1.00[ASN][1000 genomes]
rs3129980	1.00[ASN][1000 genomes]
rs3129981	1.00[ASN][1000 genomes]
rs3129982	1.00[ASN][1000 genomes]
rs3129983	1.00[ASN][1000 genomes]
rs3129985	1.00[ASN][1000 genomes]
rs3130641	1.00[ASN][1000 genomes]
rs3130665	1.00[ASN][1000 genomes]
rs3130669	1.00[ASN][1000 genomes]
rs3130673	1.00[ASN][1000 genomes]
rs3131041	1.00[ASN][1000 genomes]
rs3131044	1.00[ASN][1000 genomes]
rs3131045	1.00[ASN][1000 genomes]
rs3131047	1.00[ASN][1000 genomes]
rs3131048	1.00[ASN][1000 genomes]
rs3131049	1.00[ASN][1000 genomes]
rs3131050	1.00[ASN][1000 genomes]
rs3131055	1.00[ASN][1000 genomes]
rs3131058	1.00[ASN][1000 genomes]
rs3131060	1.00[ASN][1000 genomes]
rs3132599	1.00[ASN][1000 genomes]
rs3132605	1.00[ASN][1000 genomes]
rs45565239	1.00[ASN][1000 genomes]
rs55694686	1.00[ASN][1000 genomes]
rs55702639	1.00[ASN][1000 genomes]
rs55707154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55787895	1.00[AMR][1000 genomes]
rs55848160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56051116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56111713	1.00[ASN][1000 genomes]
rs56123606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56183784	1.00[ASN][1000 genomes]
rs56327229	1.00[ASN][1000 genomes]
rs56377503	1.00[ASN][1000 genomes]
rs56804692	1.00[ASN][1000 genomes]
rs886424	1.00[ASN][1000 genomes]
rs886425	1.00[ASN][1000 genomes]
rs9262200	1.00[ASN][1000 genomes]
rs9262202	1.00[ASN][1000 genomes]
rs9262203	1.00[ASN][1000 genomes]
rs9262204	1.00[ASN][1000 genomes]
rs9468857	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv884108	chr6:30821187-30838497	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv884109	chr6:30824532-30872203	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30823600-30835400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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