Variant report

Variant	rs56107923
Chromosome Location	chr6:109931580-109931581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109927783..109929912-chr6:109931522..109933858,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1590186	0.81[EUR][1000 genomes]
rs1998813	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947012	0.95[EUR][1000 genomes]
rs55895756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378532	0.83[EUR][1000 genomes]
rs7454802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv949475	chr6:109907936-110160501	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109923600-109932000	Weak transcription	Spleen	Spleen
2	chr6:109923600-109952600	Weak transcription	Right Ventricle	heart
3	chr6:109925200-109932000	Weak transcription	Psoas Muscle	Psoas
4	chr6:109925200-109932600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:109925400-109932600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:109925400-109932600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:109925600-109932600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:109925600-109933000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:109926000-109932600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:109926000-109932600	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:109926200-109932600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:109926400-109932200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:109926400-109932400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:109926400-109934200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:109926600-109932600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:109926600-109932600	Weak transcription	Liver	Liver
17	chr6:109926600-109934400	Weak transcription	Brain Substantia Nigra	brain
18	chr6:109926800-109935400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:109927000-109932600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:109927200-109932200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:109927600-109935200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:109928000-109931800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:109928000-109932000	Weak transcription	Aorta	Aorta
24	chr6:109928000-109932000	Weak transcription	Gastric	stomach
25	chr6:109928000-109932000	Weak transcription	Lung	lung
26	chr6:109928000-109932600	Weak transcription	Left Ventricle	heart
27	chr6:109928000-109966400	Weak transcription	Pancreas	Pancrea
28	chr6:109928200-109932000	Weak transcription	Fetal Thymus	thymus
29	chr6:109928200-109932000	Weak transcription	Dnd41	blood
30	chr6:109929400-109932600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:109930200-109932000	Weak transcription	Brain Germinal Matrix	brain
32	chr6:109930400-109931800	Enhancers	Primary T cells from cord blood	blood
33	chr6:109930600-109932600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:109930800-109932000	Weak transcription	Primary B cells from cord blood	blood
35	chr6:109930800-109932000	Weak transcription	Small Intestine	intestine
36	chr6:109931000-109932600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr6:109931000-109932600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:109931200-109931800	Weak transcription	Fetal Intestine Small	intestine
39	chr6:109931200-109931800	Weak transcription	Thymus	Thymus

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