Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080925	0.85[CEU][hapmap]
rs13437492	0.87[CEU][hapmap]
rs1476386	1.00[CEU][hapmap]
rs17070590	0.87[CEU][hapmap]
rs17602109	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs2232441	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2275649	1.00[CEU][hapmap]
rs28635303	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4946972	0.87[CEU][hapmap]
rs4946975	0.87[CEU][hapmap]
rs4946977	0.87[CEU][hapmap]
rs4946979	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4947012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs55895756	0.81[EUR][1000 genomes]
rs56107923	0.81[EUR][1000 genomes]
rs56378532	1.00[ASN][1000 genomes]
rs7454802	0.81[EUR][1000 genomes]
rs749621	0.87[CEU][hapmap]
rs9480935	1.00[CEU][hapmap]
rs9480959	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9480962	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9480965	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9487119	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9487124	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1590186	RP11-425D10.10	cis	Thyroid	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109835400-109851400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:109835600-109844400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:109837400-109842600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:109837800-109842800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:109838000-109842000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:109838400-109842000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:109838400-109842200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
9	chr6:109839000-109844600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:109839000-109848200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:109840600-109841000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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