Variant report

Variant	rs4946975
Chromosome Location	chr6:109769216-109769217
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109696194..109698652-chr6:109768450..109770032,2	K562	blood:
2	chr6:109549799..109552597-chr6:109768682..109770308,2	K562	blood:
3	chr6:109767345..109770309-chr6:109802803..109805406,2	MCF-7	breast:
4	chr6:109756751..109759661-chr6:109767137..109769430,2	MCF-7	breast:
5	chr6:109701777..109705568-chr6:109765713..109769272,5	K562	blood:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000112365	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10080925	1.00[CEU][hapmap]
rs13437492	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1476386	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs17070554	0.87[EUR][1000 genomes]
rs17070590	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1998813	0.87[CEU][hapmap]
rs2146411	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2177092	0.89[EUR][1000 genomes]
rs2275649	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3757229	0.87[EUR][1000 genomes]
rs3757237	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs41288560	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4946968	0.89[EUR][1000 genomes]
rs4946971	0.89[EUR][1000 genomes]
rs4946972	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4946977	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6907769	0.81[EUR][1000 genomes]
rs749621	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs752260	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9480934	0.87[EUR][1000 genomes]
rs9480954	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9480959	0.87[CEU][hapmap]
rs9487074	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs9487083	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs9487087	0.89[EUR][1000 genomes]
rs9487099	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9487106	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9487109	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109762800-109775800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:109763200-109774400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:109763200-109775600	Weak transcription	Fetal Kidney	kidney
4	chr6:109763200-109775800	Weak transcription	HUVEC	blood vessel
5	chr6:109763400-109770400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:109763400-109775000	Strong transcription	NHLF	lung
7	chr6:109763400-109775200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:109763600-109769400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109763600-109769600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:109763600-109770000	Strong transcription	NHEK	skin
11	chr6:109763600-109770800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:109763600-109773200	Weak transcription	Fetal Brain Male	brain
13	chr6:109763600-109775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:109763600-109775200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:109763600-109775800	Weak transcription	Right Atrium	heart
16	chr6:109763800-109769600	Strong transcription	Fetal Muscle Leg	muscle
17	chr6:109763800-109769800	Strong transcription	Thymus	Thymus
18	chr6:109763800-109770600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:109763800-109770600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:109763800-109770800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:109763800-109771000	Strong transcription	Fetal Intestine Small	intestine
22	chr6:109763800-109774400	Strong transcription	HSMM	muscle
23	chr6:109763800-109774600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:109763800-109774800	Strong transcription	Fetal Stomach	stomach
25	chr6:109763800-109774800	Weak transcription	Small Intestine	intestine
26	chr6:109763800-109775400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:109763800-109775400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:109763800-109775600	Weak transcription	HepG2	liver
29	chr6:109764000-109774400	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr6:109764000-109774600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:109764000-109774800	Strong transcription	Fetal Intestine Large	intestine
32	chr6:109764000-109775000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:109764200-109769400	Strong transcription	Placenta	Placenta
34	chr6:109764200-109770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr6:109764200-109774600	Strong transcription	Brain Germinal Matrix	brain
36	chr6:109764200-109774600	Weak transcription	Stomach Mucosa	stomach
37	chr6:109764200-109774800	Strong transcription	Fetal Brain Female	brain
38	chr6:109764400-109769400	Strong transcription	Gastric	stomach
39	chr6:109764400-109769600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:109764400-109770400	Strong transcription	Spleen	Spleen
41	chr6:109764400-109770600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:109764400-109775800	Weak transcription	Hela-S3	cervix
43	chr6:109764600-109770600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:109764600-109770600	Strong transcription	Aorta	Aorta
45	chr6:109764800-109769800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:109764800-109770800	Strong transcription	Lung	lung
47	chr6:109765000-109770600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:109765000-109771800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:109765400-109773600	Strong transcription	NHDF-Ad	bronchial
50	chr6:109765400-109773800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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