Variant report

Variant	rs9487083
Chromosome Location	chr6:109715602-109715603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109701817..109708859-chr6:109709273..109715844,12	K562	blood:
2	chr6:109701635..109705830-chr6:109715180..109719953,6	MCF-7	breast:
3	chr6:109415474..109417008-chr6:109713860..109716302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135535	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000183137	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10080925	0.87[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13437492	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476386	0.92[MEX][hapmap];0.90[TSI][hapmap]
rs17070554	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17070590	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998410	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1998411	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1998813	0.86[CEU][hapmap]
rs2146411	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177092	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275649	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757229	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757232	0.84[AFR][1000 genomes]
rs3757237	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41288560	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4313033	0.84[AFR][1000 genomes]
rs4946968	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946972	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946975	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs4946977	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6907769	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749621	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752260	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480934	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480935	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9480937	0.89[AFR][1000 genomes]
rs9480938	0.84[AFR][1000 genomes]
rs9480954	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480959	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9487071	0.84[AFR][1000 genomes]
rs9487074	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487077	0.84[AFR][1000 genomes]
rs9487078	0.84[AFR][1000 genomes]
rs9487087	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487099	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487106	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487109	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109705000-109745200	Weak transcription	Fetal Kidney	kidney
2	chr6:109706200-109717200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:109706200-109717800	Weak transcription	Thymus	Thymus
4	chr6:109706400-109718400	Weak transcription	Primary B cells from cord blood	blood
5	chr6:109706600-109717400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:109706600-109735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:109706800-109718600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:109711800-109725000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:109712800-109716400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:109712800-109736200	Weak transcription	Left Ventricle	heart
12	chr6:109714200-109716000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:109714800-109715800	Enhancers	HMEC	breast
14	chr6:109714800-109716000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:109714800-109716000	Enhancers	Stomach Mucosa	stomach
16	chr6:109714800-109716200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:109714800-109716200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:109715000-109716000	Enhancers	Hela-S3	cervix
19	chr6:109715000-109716200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:109715000-109716200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:109715200-109717200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:109715200-109721600	Weak transcription	K562	blood
23	chr6:109715400-109715800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:109715400-109716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:109715400-109717200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:109715400-109730400	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:109715600-109715800	Enhancers	Gastric	stomach
28	chr6:109715600-109715800	Enhancers	NHDF-Ad	bronchial

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