Variant report

Variant	rs9487106
Chromosome Location	chr6:109755309-109755310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:109755277-109755494	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:109755265-109756236	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109752212..109757242-chr6:109759553..109764133,7	MCF-7	breast:
2	chr6:109750853..109754544-chr6:109754754..109757262,3	MCF-7	breast:
3	chr6:109753662..109755641-chr6:109776640..109778419,2	K562	blood:
4	chr6:109747606..109757389-chr6:109757828..109761794,11	K562	blood:

Variant related genes	Relation type
PPIL6	TF binding region
ENSG00000185250	Chromatin interaction
ENSG00000135596	Chromatin interaction
ENSG00000135587	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10080925	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13437492	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476386	0.89[AFR][1000 genomes]
rs17070554	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17070590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998410	0.87[ASN][1000 genomes]
rs1998411	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2146411	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177092	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275649	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757229	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757237	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41288560	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946968	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946971	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946972	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946975	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946977	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6907769	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749621	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752260	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480934	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487074	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487083	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487087	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487109	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
3	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:109736600-109760800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:109745600-109760800	Weak transcription	Gastric	stomach
6	chr6:109750800-109760200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:109750800-109760400	Weak transcription	Ovary	ovary
8	chr6:109750800-109760800	Weak transcription	Brain Substantia Nigra	brain
9	chr6:109751000-109760200	Weak transcription	Osteobl	bone
10	chr6:109751000-109760800	Weak transcription	Right Atrium	heart
11	chr6:109751200-109760400	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:109751200-109761400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:109751400-109760800	Weak transcription	Fetal Stomach	stomach
14	chr6:109751600-109760400	Weak transcription	NHEK	skin
15	chr6:109753800-109760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:109754000-109760800	Weak transcription	Pancreas	Pancrea
17	chr6:109754200-109758400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:109754400-109756600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:109754600-109756400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:109754800-109756400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:109754800-109760400	Weak transcription	K562	blood
22	chr6:109754800-109760600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:109755000-109756200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:109755200-109758200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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