Variant report

Variant	rs4946968
Chromosome Location	chr6:109679110-109679111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109676926..109679753-chr6:109685240..109687572,2	K562	blood:
2	chr6:109668992..109672376-chr6:109675520..109680148,6	K562	blood:
3	chr6:109666918..109669416-chr6:109676939..109680789,3	MCF-7	breast:
4	chr6:109675179..109679333-chr6:109679553..109683129,6	K562	blood:
5	chr6:109678828..109681635-chr6:109688791..109690636,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10080925	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437492	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070554	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070590	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998410	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1998411	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2146411	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757229	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757237	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41288560	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946971	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946972	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946975	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs4946977	0.86[CEU][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6907769	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs749621	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs752260	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9480934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480954	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487074	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487083	0.86[CEU][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487087	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487099	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487106	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487109	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:109671200-109680200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:109671200-109681400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:109672000-109683000	Weak transcription	Esophagus	oesophagus
8	chr6:109673000-109680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:109673200-109681600	Weak transcription	Pancreas	Pancrea
10	chr6:109673600-109680400	Weak transcription	Spleen	Spleen
11	chr6:109673600-109681800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:109673600-109683000	Weak transcription	Psoas Muscle	Psoas
13	chr6:109673600-109683200	Weak transcription	HMEC	breast
14	chr6:109673600-109683400	Weak transcription	Gastric	stomach
15	chr6:109673600-109683400	Weak transcription	HUVEC	blood vessel
16	chr6:109673600-109687000	Weak transcription	Right Ventricle	heart
17	chr6:109673800-109682800	Weak transcription	Stomach Mucosa	stomach
18	chr6:109674000-109683000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:109674000-109683200	Weak transcription	Small Intestine	intestine
20	chr6:109674400-109681800	Strong transcription	Adipose Nuclei	Adipose
21	chr6:109674600-109680600	Strong transcription	Left Ventricle	heart
22	chr6:109675000-109684600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
29	chr6:109675200-109684400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:109675200-109688800	Strong transcription	Primary T cells from cord blood	blood
31	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:109675400-109691400	Strong transcription	Osteobl	bone
33	chr6:109676800-109680800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:109677000-109679400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr6:109677000-109683400	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr6:109677000-109684200	Strong transcription	Brain Hippocampus Middle	brain
38	chr6:109677000-109687200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
40	chr6:109677200-109679200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr6:109677200-109679200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:109677200-109679400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr6:109677200-109679800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:109677200-109684000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:109677400-109679200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:109677400-109679200	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr6:109677400-109679800	Weak transcription	Brain Angular Gyrus	brain
48	chr6:109677600-109681000	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr6:109677600-109683200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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