Variant report

Variant	rs17070590
Chromosome Location	chr6:109745623-109745624
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109742336..109749135-chr6:109759459..109767338,11	MCF-7	breast:
2	chr6:109744187..109748407-chr6:109760095..109763715,4	MCF-7	breast:
3	chr6:109744870..109747846-chr6:109748398..109750532,2	K562	blood:

Variant related genes	Relation type
ENSG00000185250	Chromatin interaction
ENSG00000135587	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10080925	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13437492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1476386	0.87[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17070554	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998410	0.87[ASN][1000 genomes]
rs1998411	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1998813	0.87[CEU][hapmap]
rs2146411	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177092	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2275649	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757229	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757237	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41288560	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946968	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946971	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946975	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4946977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6907769	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs749621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752260	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480934	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480959	0.87[CEU][hapmap]
rs9487074	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487083	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487087	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487109	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109707000-109755400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:109721200-109760600	Weak transcription	Fetal Brain Female	brain
3	chr6:109724400-109750400	Weak transcription	Ovary	ovary
4	chr6:109725800-109760800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:109735200-109750200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:109735600-109750000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:109736600-109760800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:109737400-109750200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:109740400-109754800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:109745200-109745800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:109745200-109745800	Enhancers	Fetal Kidney	kidney
12	chr6:109745200-109745800	Enhancers	HepG2	liver
13	chr6:109745200-109746000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:109745200-109746000	Enhancers	Adipose Nuclei	Adipose
15	chr6:109745200-109746200	Enhancers	Stomach Mucosa	stomach
16	chr6:109745200-109746400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:109745200-109746400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:109745200-109746400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:109745200-109746600	Enhancers	NHEK	skin
20	chr6:109745200-109747000	Enhancers	Placenta	Placenta
21	chr6:109745400-109745800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:109745400-109745800	Enhancers	Esophagus	oesophagus
23	chr6:109745400-109745800	Enhancers	Left Ventricle	heart
24	chr6:109745400-109745800	Enhancers	Spleen	Spleen
25	chr6:109745400-109745800	Enhancers	HMEC	breast
26	chr6:109745400-109746000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:109745400-109746200	Enhancers	Osteobl	bone
28	chr6:109745400-109746400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:109745400-109746400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:109745400-109746400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:109745400-109746400	Enhancers	K562	blood
32	chr6:109745400-109746600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:109745400-109746800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:109745600-109746000	Enhancers	Pancreas	Pancrea
35	chr6:109745600-109746400	Enhancers	NHDF-Ad	bronchial
36	chr6:109745600-109760800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links