Variant report

Variant	rs752260
Chromosome Location	chr6:109770808-109770809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:48610607..48612431-chr6:109769391..109772188,2	MCF-7	breast:
2	chr6:109770371..109773024-chr6:109807786..109809712,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223537	Chromatin interaction
ENSG00000049283	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10080925	0.83[EUR][1000 genomes]
rs13437492	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17070554	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17070590	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2146411	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2177092	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2275649	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3757229	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3757237	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41288560	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946968	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4946971	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946972	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946975	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4946977	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907769	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs749621	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9480934	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9480954	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487074	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9487083	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487087	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487099	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487106	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9487109	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109762800-109775800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:109763200-109774400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:109763200-109775600	Weak transcription	Fetal Kidney	kidney
4	chr6:109763200-109775800	Weak transcription	HUVEC	blood vessel
5	chr6:109763400-109775000	Strong transcription	NHLF	lung
6	chr6:109763400-109775200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:109763600-109773200	Weak transcription	Fetal Brain Male	brain
8	chr6:109763600-109775000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:109763600-109775200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:109763600-109775800	Weak transcription	Right Atrium	heart
11	chr6:109763800-109771000	Strong transcription	Fetal Intestine Small	intestine
12	chr6:109763800-109774400	Strong transcription	HSMM	muscle
13	chr6:109763800-109774600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:109763800-109774800	Strong transcription	Fetal Stomach	stomach
15	chr6:109763800-109774800	Weak transcription	Small Intestine	intestine
16	chr6:109763800-109775400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:109763800-109775400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:109763800-109775600	Weak transcription	HepG2	liver
19	chr6:109764000-109774400	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr6:109764000-109774600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:109764000-109774800	Strong transcription	Fetal Intestine Large	intestine
22	chr6:109764000-109775000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:109764200-109774600	Strong transcription	Brain Germinal Matrix	brain
24	chr6:109764200-109774600	Weak transcription	Stomach Mucosa	stomach
25	chr6:109764200-109774800	Strong transcription	Fetal Brain Female	brain
26	chr6:109764400-109775800	Weak transcription	Hela-S3	cervix
27	chr6:109765000-109771800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:109765400-109773600	Strong transcription	NHDF-Ad	bronchial
29	chr6:109765400-109773800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:109766600-109775800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:109766800-109773200	Weak transcription	NH-A	brain
32	chr6:109766800-109775200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:109767000-109775600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:109767000-109776000	Weak transcription	A549	lung
35	chr6:109767200-109776000	Weak transcription	Osteobl	bone
36	chr6:109767400-109774400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:109767800-109773000	Weak transcription	HMEC	breast
38	chr6:109768000-109772200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:109768000-109772800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:109768200-109772600	Weak transcription	Fetal Lung	lung
41	chr6:109768200-109772800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:109768200-109774800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:109768400-109771000	Weak transcription	Dnd41	blood
44	chr6:109768400-109771200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:109768400-109771800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:109768400-109772000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:109768400-109772800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:109768400-109772800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:109768400-109773000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:109768400-109775800	Weak transcription	Liver	Liver

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