Variant report

Variant	rs9480934
Chromosome Location	chr6:109672048-109672049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109663736..109666445-chr6:109669637..109672220,3	K562	blood:
2	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
3	chr6:109668992..109672376-chr6:109675520..109680148,6	K562	blood:
4	chr6:109415919..109418323-chr6:109670893..109672500,2	MCF-7	breast:
5	chr6:109670785..109672543-chr6:109675154..109677381,2	MCF-7	breast:
6	chr6:109669515..109674044-chr6:109702916..109706265,4	K562	blood:
7	chr6:109660514..109663248-chr6:109671174..109674117,2	K562	blood:
8	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
9	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
10	chr6:109669590..109673452-chr6:109701898..109703889,4	MCF-7	breast:
11	chr6:109659815..109666445-chr6:109666719..109672363,9	K562	blood:
12	chr6:109667528..109670285-chr6:109670801..109673728,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000183137	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10080925	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13437492	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070554	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17070590	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998410	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1998411	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2146411	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2177092	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757229	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757232	0.84[AFR][1000 genomes]
rs3757237	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41288560	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4313033	0.84[AFR][1000 genomes]
rs4946968	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946971	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946972	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946975	0.87[EUR][1000 genomes]
rs4946977	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6907769	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs749621	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs752260	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9480935	0.89[AFR][1000 genomes]
rs9480937	0.89[AFR][1000 genomes]
rs9480938	0.84[AFR][1000 genomes]
rs9480954	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9480959	0.84[AFR][1000 genomes]
rs9487071	0.84[AFR][1000 genomes]
rs9487074	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487077	0.84[AFR][1000 genomes]
rs9487078	0.84[AFR][1000 genomes]
rs9487083	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487087	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487099	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487106	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9487109	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
5	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
6	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109664200-109672800	Weak transcription	HSMM	muscle
10	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
13	chr6:109666400-109675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:109668000-109673800	Enhancers	Stomach Mucosa	stomach
15	chr6:109668000-109674000	Enhancers	Fetal Intestine Large	intestine
16	chr6:109668000-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109668600-109674800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:109669000-109674000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:109669400-109672600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:109669400-109673800	Enhancers	Colonic Mucosa	Colon
22	chr6:109669600-109677000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:109669600-109677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:109669800-109672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:109669800-109672600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:109669800-109677200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:109670200-109673000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:109670400-109672200	Enhancers	Fetal Heart	heart
29	chr6:109670400-109673200	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:109670400-109674000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:109670600-109672200	Enhancers	Right Atrium	heart
32	chr6:109670600-109672200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:109670600-109672400	Enhancers	NHDF-Ad	bronchial
34	chr6:109670600-109673200	Enhancers	Pancreas	Pancrea
35	chr6:109670800-109672200	Enhancers	Fetal Muscle Trunk	muscle
36	chr6:109670800-109674400	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr6:109671000-109672600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:109671000-109672800	Enhancers	Lung	lung
39	chr6:109671000-109673600	Enhancers	Gastric	stomach
40	chr6:109671000-109677800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr6:109671200-109672400	Weak transcription	HMEC	breast
43	chr6:109671200-109672600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:109671200-109677000	Weak transcription	Aorta	Aorta
45	chr6:109671200-109677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:109671200-109680200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:109671200-109681400	Weak transcription	Brain Anterior Caudate	brain
48	chr6:109671400-109672200	Enhancers	Fetal Thymus	thymus
49	chr6:109671400-109672600	Weak transcription	NHEK	skin
50	chr6:109671400-109672800	Weak transcription	Muscle Satellite Cultured Cells	--

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