Variant report

Variant	rs9480938
Chromosome Location	chr6:109684108-109684109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109682199..109685973-chr6:109687053..109690833,5	MCF-7	breast:
2	chr6:109658622..109660807-chr6:109682756..109684452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13437492	0.84[AFR][1000 genomes]
rs1476386	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17602109	0.86[EUR][1000 genomes]
rs2177092	0.84[AFR][1000 genomes]
rs2232441	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2275649	0.84[AFR][1000 genomes]
rs28635303	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757232	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757236	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4313033	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946971	0.84[AFR][1000 genomes]
rs4946979	0.95[EUR][1000 genomes]
rs9480934	0.84[AFR][1000 genomes]
rs9480935	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480959	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9480962	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9480965	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487077	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487078	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487083	0.84[AFR][1000 genomes]
rs9487119	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487124	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109673600-109687000	Weak transcription	Right Ventricle	heart
2	chr6:109675000-109684600	Strong transcription	Stomach Smooth Muscle	stomach
3	chr6:109675000-109691800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:109675000-109692600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:109675000-109693200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:109675000-109694400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr6:109675000-109694600	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:109675000-109700800	Strong transcription	Placenta	Placenta
9	chr6:109675200-109684400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:109675200-109688800	Strong transcription	Primary T cells from cord blood	blood
11	chr6:109675200-109693200	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:109675400-109691400	Strong transcription	Osteobl	bone
13	chr6:109676800-109693800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:109677000-109684200	Strong transcription	Brain Hippocampus Middle	brain
15	chr6:109677000-109687200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:109677000-109698200	Strong transcription	Fetal Intestine Large	intestine
17	chr6:109677600-109695000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:109677800-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:109678200-109687800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:109678200-109691400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:109678200-109694600	Strong transcription	Fetal Thymus	thymus
22	chr6:109678200-109695200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr6:109678400-109684200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:109678400-109684200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:109678400-109684200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:109678400-109685400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:109678400-109694400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:109678400-109694400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:109678600-109693200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:109678600-109693400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:109678800-109684600	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:109678800-109695400	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr6:109678800-109699000	Strong transcription	Dnd41	blood
34	chr6:109679000-109688200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:109679000-109693200	Strong transcription	K562	blood
36	chr6:109679200-109700400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:109679400-109689000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr6:109679400-109700600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:109680200-109684200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:109680400-109697200	Weak transcription	Fetal Brain Male	brain
41	chr6:109680600-109700600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:109680800-109688200	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:109680800-109694400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr6:109681000-109689400	Weak transcription	Brain Angular Gyrus	brain
45	chr6:109681400-109686400	Strong transcription	Brain Anterior Caudate	brain
46	chr6:109681600-109684200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:109681600-109685800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:109681800-109684200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:109681800-109684200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr6:109682000-109684200	Strong transcription	Brain Substantia Nigra	brain

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