Variant report

Variant	rs9487124
Chromosome Location	chr6:109799010-109799011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109561439..109564870-chr6:109795296..109799146,3	K562	blood:
2	chr6:109771720..109774696-chr6:109798404..109799936,2	MCF-7	breast:
3	chr6:109764918..109767515-chr6:109797927..109799949,2	MCF-7	breast:
4	chr6:109766673..109769201-chr6:109798430..109801986,3	MCF-7	breast:
5	chr6:109783085..109784938-chr6:109797563..109800257,2	K562	blood:
6	chr6:109702682..109704244-chr6:109798920..109800659,2	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000135596	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1476386	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1590186	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17602109	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2232441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757232	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757236	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4313033	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946969	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946979	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9480935	0.87[ASN][1000 genomes]
rs9480937	0.95[EUR][1000 genomes]
rs9480938	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9480959	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9480962	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480965	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487071	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487077	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487078	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9487119	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9487124	RP11-425D10.10	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109780600-109800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:109781400-109802200	Strong transcription	HSMM	muscle
3	chr6:109782400-109799200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:109782400-109799800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:109782400-109799800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:109782400-109800000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:109782400-109803000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:109782600-109799600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr6:109782600-109800000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:109783200-109799800	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:109785600-109799200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr6:109786200-109800200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:109786400-109799600	Strong transcription	Fetal Muscle Leg	muscle
14	chr6:109786600-109799200	Strong transcription	Fetal Stomach	stomach
15	chr6:109786800-109799200	Strong transcription	Stomach Smooth Muscle	stomach
16	chr6:109786800-109799800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:109787800-109800600	Weak transcription	Fetal Heart	heart
18	chr6:109789400-109803200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:109790800-109799200	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr6:109793600-109799200	Weak transcription	Fetal Brain Male	brain
21	chr6:109794400-109801200	Weak transcription	HSMMtube	muscle
22	chr6:109795000-109800000	Weak transcription	NH-A	brain
23	chr6:109795200-109802400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:109795800-109799200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:109796400-109799200	Strong transcription	NHEK	skin
26	chr6:109796800-109800000	Weak transcription	NHLF	lung
27	chr6:109797000-109799800	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr6:109797400-109799400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:109797400-109799600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:109797800-109799200	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:109797800-109799200	Genic enhancers	Brain Hippocampus Middle	brain
32	chr6:109797800-109799200	Genic enhancers	Pancreas	Pancrea
33	chr6:109797800-109799400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:109797800-109799400	Genic enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:109797800-109799600	Genic enhancers	Primary B cells from cord blood	blood
36	chr6:109797800-109799800	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr6:109797800-109799800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:109797800-109800000	Genic enhancers	Brain Angular Gyrus	brain
39	chr6:109797800-109800200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:109797800-109803400	Transcr. at gene 5' and 3'	Dnd41	blood
41	chr6:109798000-109799200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:109798000-109799400	Genic enhancers	Lung	lung
43	chr6:109798000-109799800	Genic enhancers	Thymus	Thymus
44	chr6:109798000-109799800	Weak transcription	HUVEC	blood vessel
45	chr6:109798000-109800000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:109798000-109800200	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr6:109798000-109800200	Weak transcription	A549	lung
48	chr6:109798000-109803400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:109798000-109803400	Genic enhancers	Fetal Thymus	thymus
50	chr6:109798200-109799800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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