Variant report

Variant	rs9480935
Chromosome Location	chr6:109672209-109672210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109663736..109666445-chr6:109669637..109672220,3	K562	blood:
2	chr6:109668456..109674736-chr6:109696300..109702886,9	K562	blood:
3	chr6:109668992..109672376-chr6:109675520..109680148,6	K562	blood:
4	chr6:109415919..109418323-chr6:109670893..109672500,2	MCF-7	breast:
5	chr6:109670785..109672543-chr6:109675154..109677381,2	MCF-7	breast:
6	chr6:109669515..109674044-chr6:109702916..109706265,4	K562	blood:
7	chr6:109660514..109663248-chr6:109671174..109674117,2	K562	blood:
8	chr6:109665458..109673633-chr6:109699710..109704931,12	MCF-7	breast:
9	chr6:109669396..109675577-chr6:109699158..109705270,9	K562	blood:
10	chr6:109669590..109673452-chr6:109701898..109703889,4	MCF-7	breast:
11	chr6:109659815..109666445-chr6:109666719..109672363,9	K562	blood:
12	chr6:109667528..109670285-chr6:109670801..109673728,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1476386	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2232441	0.87[ASN][1000 genomes]
rs28635303	0.87[ASN][1000 genomes]
rs3757232	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3757236	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4313033	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946969	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946971	0.89[AFR][1000 genomes]
rs9320277	1.00[YRI][hapmap]
rs9480934	0.89[AFR][1000 genomes]
rs9480937	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9480938	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480959	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9480962	0.87[ASN][1000 genomes]
rs9480965	0.87[ASN][1000 genomes]
rs9487071	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487077	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487078	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487083	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9487110	1.00[YRI][hapmap]
rs9487119	0.87[ASN][1000 genomes]
rs9487124	0.87[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
5	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
6	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:109662600-109682000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:109662800-109677000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:109664200-109672800	Weak transcription	HSMM	muscle
10	chr6:109665600-109677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:109665600-109680400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:109666000-109678000	Weak transcription	Fetal Kidney	kidney
13	chr6:109666400-109675200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:109668000-109673800	Enhancers	Stomach Mucosa	stomach
15	chr6:109668000-109674000	Enhancers	Fetal Intestine Large	intestine
16	chr6:109668000-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109668600-109674800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:109669000-109674000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:109669000-109683400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:109669400-109672600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:109669400-109673800	Enhancers	Colonic Mucosa	Colon
22	chr6:109669600-109677000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:109669600-109677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:109669800-109672600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:109669800-109672600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:109669800-109677200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:109670200-109673000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:109670400-109673200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:109670400-109674000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:109670600-109672400	Enhancers	NHDF-Ad	bronchial
31	chr6:109670600-109673200	Enhancers	Pancreas	Pancrea
32	chr6:109670800-109674400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr6:109671000-109672600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:109671000-109672800	Enhancers	Lung	lung
35	chr6:109671000-109673600	Enhancers	Gastric	stomach
36	chr6:109671000-109677800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:109671000-109681600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:109671200-109672400	Weak transcription	HMEC	breast
39	chr6:109671200-109672600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:109671200-109677000	Weak transcription	Aorta	Aorta
41	chr6:109671200-109677200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:109671200-109680200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:109671200-109681400	Weak transcription	Brain Anterior Caudate	brain
44	chr6:109671400-109672600	Weak transcription	NHEK	skin
45	chr6:109671400-109672800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr6:109671400-109672800	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:109671400-109672800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:109671400-109673000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:109671400-109674400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:109671400-109675000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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